Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BSR20_RS07425 Genome accession   NZ_CP018189
Coordinates   1625647..1627383 (-) Length   578 a.a.
NCBI ID   WP_045771920.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1620647..1632383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS07405 (BSR20_07480) - 1620679..1621662 (-) 984 WP_045771916.1 rhodanese-related sulfurtransferase -
  BSR20_RS07410 (BSR20_07485) - 1621853..1622554 (-) 702 WP_156209879.1 glucosamine-6-phosphate deaminase -
  BSR20_RS07415 (BSR20_07490) queA 1622705..1623748 (+) 1044 WP_156209881.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  BSR20_RS07420 (BSR20_07495) rcrQ 1623847..1625634 (-) 1788 WP_156209883.1 ABC transporter ATP-binding protein Regulator
  BSR20_RS07425 (BSR20_07500) rcrP 1625647..1627383 (-) 1737 WP_045771920.1 ABC transporter ATP-binding protein Regulator
  BSR20_RS10485 - 1627582..1627737 (-) 156 Protein_1414 LysR family transcriptional regulator -
  BSR20_RS07435 (BSR20_07505) - 1627747..1629300 (-) 1554 WP_037605638.1 BCCT family transporter -
  BSR20_RS07445 (BSR20_07515) - 1629528..1630121 (-) 594 WP_045771921.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein -
  BSR20_RS10490 - 1630179..1631252 (-) 1074 Protein_1417 type IV secretory system conjugative DNA transfer family protein -
  BSR20_RS10540 - 1631312..1631434 (-) 123 WP_002269975.1 hypothetical protein -
  BSR20_RS07460 (BSR20_07525) rplL 1631632..1632000 (-) 369 WP_002886110.1 50S ribosomal protein L7/L12 -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64845.81 Da        Isoelectric Point: 5.5902

>NTDB_id=173760 BSR20_RS07425 WP_045771920.1 1625647..1627383(-) (rcrP) [Streptococcus salivarius strain ICDC3]
MAYIWSYLRRYPKWLAMNFTAAILFVIANLGLPTVLARMIDEGINRGDVDKLYAYAWVMFGVVLTGIVGRILLSYAVGKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFAEQILKMGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPFLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSNKLFKLTGLTE
PLFVQIIIAMIVAIVWFALEPLGSGTLAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETETKGYLEFDNVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIDSKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=173760 BSR20_RS07425 WP_045771920.1 1625647..1627383(-) (rcrP) [Streptococcus salivarius strain ICDC3]
ATGGCTTATATTTGGTCTTATCTCAGACGTTATCCTAAGTGGCTAGCAATGAATTTTACGGCAGCCATTTTATTTGTTAT
TGCTAACTTGGGTTTGCCGACGGTTCTTGCCAGAATGATTGATGAGGGAATAAACCGTGGTGATGTTGATAAGCTTTACG
CTTATGCTTGGGTCATGTTTGGTGTAGTTTTGACTGGGATTGTTGGTCGTATACTTCTGTCCTATGCGGTTGGTAAATTG
ACTACTACCATGGTGCAGGTCATGCGTAATGACATTTACGCTAAGCTTCAGGAGTATTCCCACCATGAGTACGAGCAGAT
TGGGGTATCTTCTTTGGTAACTCGTATTACATCTGATGCTTTTGTTCTCATGCAATTTGCAGAACAGATTCTAAAGATGG
GTGTCATTACTCCTCTGATGATGGTTTCCAGTGTCTTCTTGATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATCTCCTTGCCTTTCCTAGCCGTAGTAGTCTGGTATGTGGCGGTAAAAACGCGTCCGCTTTCTGAGAAACAACAGGCAAC
TCTCGATAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGAGCTTTCGCTAGAGAAGATTTTC
AAGAGAAGAAGTTTGCTTCTGAAAATGCTGTCTATGCGGATAATTCAAACAAGCTCTTTAAGTTAACTGGTTTGACTGAG
CCACTTTTTGTGCAAATCATCATCGCCATGATTGTGGCAATTGTTTGGTTTGCCCTTGAGCCATTAGGTTCTGGGACTTT
GGCAATCGGGGATTTGGTTGCCTTTATTGAGTACAGTTTCCATGCGCTATTGTCTTTCCTTTTCCTAGCCAACCTCTTTA
CCATGTATCCTCGTACGGCGGTATCTAGTGAACGTCTGCAGGAAATTATGGACATGCCTATTTCTATCAATCCAAATGAA
GATGGAGTGACAGAGACTGAGACTAAGGGATATTTGGAGTTTGACAATGTGACCTTTGCCTATCCTGGTGAAACTGAGAG
TCCTGTCCTACACAATATTTCCTTTAAGGCTAAACCAGGTGAAACCATTGCCTTTATCGGATCTACGGGTTCAGGAAAAT
CATCACTTGTGCAGTTGATTCCACGCTTTTATGATGTGACACTTGGACGCATTCTTGTTGATGGTGTGGATGTTCGTGAC
TATAATCTTAAGGCTCTTCGTCGTAAGATTGGCTTTATTCCACAAAAAGCCCTGCTCTTTACAGGAACCATCGGTGAAAA
TATTCGTTATGGTAAGGAAAATGCCAGTCATGAAGAGTTGAATCAAGCTACGGATGTCGCTCAGGCGAAGGAATTTATCG
ATAGTAAGGAAGAACGCTACGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGGGGACAAAAGCAACGTTTGTCA
ATTGCACGAGCGGTGGTTAAACGTCCTGATCTTTACATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACCTTGCGTCGCCGTCTGAAAGAAGTGACCCAGGATGCGACAGTCTTGATTGTGGCTCAACGTGTGGGTACTATCATGG
ATGCAGACCAGATTATCGTTCTTGATAAGGGTGAAATCGTGGGTCGAGGTCGTCATGAAGAGCTTATGGAAAGCAATGAG
ATTTACCGTGAAATTGCTAATTCTCAATTGAATCAAAAGAGTCTTACAGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(17-279)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.775

92.215

0.367