Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BSR20_RS07420 Genome accession   NZ_CP018189
Coordinates   1623847..1625634 (-) Length   595 a.a.
NCBI ID   WP_156209883.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1618847..1630634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS07390 (BSR20_07465) - 1618947..1619717 (-) 771 Protein_1406 nucleoside phosphorylase -
  BSR20_RS07395 (BSR20_07470) - 1619796..1620290 (-) 495 WP_045771915.1 DUF6773 family protein -
  BSR20_RS07400 (BSR20_07475) - 1620304..1620501 (-) 198 WP_045772022.1 helix-turn-helix transcriptional regulator -
  BSR20_RS07405 (BSR20_07480) - 1620679..1621662 (-) 984 WP_045771916.1 rhodanese-related sulfurtransferase -
  BSR20_RS07410 (BSR20_07485) - 1621853..1622554 (-) 702 WP_156209879.1 glucosamine-6-phosphate deaminase -
  BSR20_RS07415 (BSR20_07490) queA 1622705..1623748 (+) 1044 WP_156209881.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  BSR20_RS07420 (BSR20_07495) rcrQ 1623847..1625634 (-) 1788 WP_156209883.1 ABC transporter ATP-binding protein Regulator
  BSR20_RS07425 (BSR20_07500) rcrP 1625647..1627383 (-) 1737 WP_045771920.1 ABC transporter ATP-binding protein Regulator
  BSR20_RS10485 - 1627582..1627737 (-) 156 Protein_1414 LysR family transcriptional regulator -
  BSR20_RS07435 (BSR20_07505) - 1627747..1629300 (-) 1554 WP_037605638.1 BCCT family transporter -
  BSR20_RS07445 (BSR20_07515) - 1629528..1630121 (-) 594 WP_045771921.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 66454.55 Da        Isoelectric Point: 5.3722

>NTDB_id=173759 BSR20_RS07420 WP_156209883.1 1623847..1625634(-) (rcrQ) [Streptococcus salivarius strain ICDC3]
MKNNKKKTSHSSSFGRLWSYLQAYRFPLYLAIFLKIVSVIMSVLEPVVIGLAITELTKNTLAIIKGVEGAHINVSYVGLV
LVVYLLRGLIYELAAYYSNYFMTNAVQATVQDMRNEMTEKINRTSVSYFDKHQFGDLLGRFTSDVETVSNALQQSFLQVV
NAVFTLALVIGTVLYLNLQLGAIVVITIPITFFGARFIMSKSQPYFKQQADALGTLNGFVQENLTGFNVLKLFGREDRSL
DDFKEITEDLQKVGFKANFISGLMMPVLNGLSDLTYLIVAVLGGLQVLAGRLTIGNMQAFVQYVWQINQPIQNLTQLAGQ
LQSAKSSLDRIFQLMDEPDEANDATEVLEGDLTGQVSFKHVDFQYVADKPLIRDFNLEVNPGEMVAIVGPTGAGKSTIIN
LLMRFYDVTAGSISVDGHDIRHLSRQDYRKQFGMVLQDAWLFEGTIKENLRFGNLEATDEEIVEAAKAANVDHFIRTLPG
GYNMEMNQESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKTLMQGRTSFVIAHRLSTIQEADKI
LVLKDGQIIEQGNHESLLADKGFYYDLYNSQFAEK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=173759 BSR20_RS07420 WP_156209883.1 1623847..1625634(-) (rcrQ) [Streptococcus salivarius strain ICDC3]
ATGAAGAATAATAAAAAGAAAACAAGTCATTCCTCAAGTTTTGGCCGCCTTTGGTCCTACTTGCAGGCTTATCGTTTCCC
ACTTTACCTAGCCATTTTCCTGAAAATTGTTAGTGTTATCATGAGTGTCCTTGAGCCAGTGGTCATTGGTTTAGCTATTA
CCGAGTTAACTAAAAATACGCTGGCCATCATCAAAGGTGTGGAAGGCGCTCATATCAACGTCTCCTATGTTGGTTTGGTT
CTCGTTGTTTATCTCTTGCGTGGTCTTATTTATGAGTTGGCTGCCTACTATTCCAACTATTTCATGACCAATGCTGTGCA
AGCGACAGTTCAGGATATGCGAAATGAGATGACCGAGAAAATCAATCGTACTTCAGTGTCATACTTTGATAAGCACCAGT
TTGGAGACCTCTTGGGACGCTTTACCAGTGACGTCGAGACAGTATCTAACGCCTTGCAGCAGTCATTTTTGCAGGTTGTT
AATGCCGTCTTTACTCTAGCCTTGGTTATTGGAACAGTGCTTTACCTTAATCTTCAATTGGGAGCTATAGTTGTCATCAC
TATTCCGATTACATTCTTTGGTGCCCGCTTTATCATGAGTAAGTCTCAGCCCTACTTTAAACAACAAGCTGATGCCCTAG
GTACTCTTAATGGTTTTGTTCAGGAAAATCTGACTGGTTTCAATGTGCTTAAGCTATTTGGTCGTGAGGATAGATCCTTG
GACGACTTTAAAGAAATTACGGAAGACCTTCAGAAAGTAGGCTTTAAGGCTAATTTCATTTCAGGACTTATGATGCCGGT
TCTTAACGGTTTATCTGACTTGACCTATCTAATTGTCGCTGTTTTGGGTGGTCTGCAAGTCTTGGCTGGTCGCTTGACGA
TTGGTAATATGCAGGCCTTTGTTCAGTACGTTTGGCAGATTAACCAACCTATTCAGAACTTGACTCAGTTGGCTGGACAA
TTGCAAAGTGCTAAATCTTCTTTGGACCGTATTTTCCAACTGATGGATGAACCAGACGAGGCTAATGATGCTACTGAAGT
GCTAGAGGGAGATTTGACTGGCCAAGTTAGCTTTAAGCATGTGGACTTCCAGTATGTGGCTGATAAACCTTTGATTCGTG
ACTTTAATCTTGAGGTTAATCCTGGTGAAATGGTAGCCATTGTCGGTCCAACCGGTGCCGGAAAATCAACGATTATCAAC
CTCCTCATGCGCTTTTATGATGTGACTGCCGGTTCTATCTCGGTTGATGGTCATGATATCCGTCACCTGTCACGTCAGGA
TTATCGTAAACAGTTTGGTATGGTGCTTCAGGATGCTTGGCTCTTTGAAGGAACTATCAAGGAAAATCTTCGCTTTGGTA
ATCTTGAGGCAACTGACGAAGAAATTGTTGAAGCTGCTAAGGCAGCCAATGTGGACCACTTTATCCGTACCCTACCTGGT
GGTTACAACATGGAGATGAACCAGGAATCAAGTAACATTTCATTGGGACAAAAACAACTTTTAACCATTGCGCGTGCGCT
TTTGGCTGATCCTAAAATCTTGATTTTAGACGAGGCAACCTCATCGGTTGATACCCGTCTGGAACTCTTGATTCAAAAAG
CCATGAAGACCCTTATGCAAGGTCGAACAAGCTTTGTCATCGCTCACCGCTTATCAACGATTCAAGAAGCAGACAAGATT
TTGGTCCTAAAAGATGGTCAAATCATCGAACAAGGAAACCATGAATCCCTCCTTGCAGATAAAGGCTTCTATTACGATTT
GTATAATAGCCAGTTTGCGGAGAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(29-310)

ABC transporter (ABC_tran)

(373-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.379

100

0.425