Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   BSR20_RS06490 Genome accession   NZ_CP018189
Coordinates   1446458..1446760 (-) Length   100 a.a.
NCBI ID   WP_014633320.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1441458..1451760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS06480 (BSR20_06545) - 1442639..1443292 (-) 654 WP_013990814.1 hypothetical protein -
  BSR20_RS06485 (BSR20_06550) - 1443304..1446294 (-) 2991 WP_156209804.1 type I restriction endonuclease subunit R -
  BSR20_RS06490 (BSR20_06555) HI0659 1446458..1446760 (-) 303 WP_014633320.1 helix-turn-helix domain-containing protein Machinery gene
  BSR20_RS06495 (BSR20_06560) - 1446762..1447115 (-) 354 WP_045001823.1 type II toxin-antitoxin system RelE/ParE family toxin -
  BSR20_RS06500 (BSR20_06565) - 1447352..1448116 (-) 765 WP_156209806.1 SDR family NAD(P)-dependent oxidoreductase -
  BSR20_RS06505 (BSR20_06570) - 1448148..1449305 (-) 1158 WP_156209807.1 Mbeg1-like protein -
  BSR20_RS06510 (BSR20_06575) - 1449415..1450041 (+) 627 WP_045771826.1 Pr6Pr family membrane protein -
  BSR20_RS06515 (BSR20_06580) - 1450079..1450921 (-) 843 WP_070578032.1 Cof-type HAD-IIB family hydrolase -
  BSR20_RS06520 (BSR20_06585) - 1451073..1451462 (+) 390 WP_155213994.1 sodium transporter -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10965.90 Da        Isoelectric Point: 10.0976

>NTDB_id=173752 BSR20_RS06490 WP_014633320.1 1446458..1446760(-) (HI0659) [Streptococcus salivarius strain ICDC3]
MAREKNPAIGSSWDDLQKTIFTKEEIAASELRVALMLEIIDARKKQGISQKKLEELSGVKQPVIARMETGKTAPQLDTVL
KILASLGKTLAVVPLDSHVK

Nucleotide


Download         Length: 303 bp        

>NTDB_id=173752 BSR20_RS06490 WP_014633320.1 1446458..1446760(-) (HI0659) [Streptococcus salivarius strain ICDC3]
ATGGCTCGAGAAAAGAATCCAGCAATTGGAAGTAGTTGGGATGATTTACAGAAAACTATTTTCACTAAAGAGGAAATCGC
GGCAAGTGAACTCCGTGTCGCACTGATGCTTGAGATTATTGATGCTCGTAAAAAACAAGGCATTTCTCAAAAGAAACTTG
AAGAGCTAAGTGGTGTCAAACAACCTGTTATCGCACGTATGGAGACAGGTAAAACAGCACCTCAGTTAGATACGGTTCTT
AAAATACTGGCGAGTCTAGGTAAGACATTGGCGGTAGTCCCACTTGATTCACATGTGAAGTAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(41-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.92

87

0.53