Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BSR20_RS05680 Genome accession   NZ_CP018189
Coordinates   1262078..1264279 (-) Length   733 a.a.
NCBI ID   WP_045772090.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1257078..1269279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS05655 (BSR20_05730) - 1258020..1258781 (-) 762 WP_004182656.1 hypothetical protein -
  BSR20_RS05660 (BSR20_05735) nth 1258909..1259553 (-) 645 WP_004182657.1 endonuclease III -
  BSR20_RS05665 (BSR20_05740) - 1259553..1260251 (-) 699 WP_004182658.1 DnaD domain-containing protein -
  BSR20_RS05670 (BSR20_05745) metA 1260324..1261268 (-) 945 WP_004182659.1 homoserine O-acetyltransferase MetA -
  BSR20_RS05675 (BSR20_05750) - 1261441..1261959 (-) 519 WP_045772089.1 adenine phosphoribosyltransferase -
  BSR20_RS05680 (BSR20_05755) recJ 1262078..1264279 (-) 2202 WP_045772090.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BSR20_RS05685 (BSR20_05760) - 1264585..1264989 (-) 405 WP_045001800.1 GNAT family N-acetyltransferase -
  BSR20_RS10590 (BSR20_05765) - 1264991..1265128 (-) 138 Protein_1071 class I SAM-dependent methyltransferase -
  BSR20_RS05695 (BSR20_05770) - 1265200..1265967 (-) 768 WP_045772091.1 SDR family NAD(P)-dependent oxidoreductase -
  BSR20_RS05700 (BSR20_05775) rnz 1265967..1266896 (-) 930 WP_045772092.1 ribonuclease Z -
  BSR20_RS05705 (BSR20_05780) - 1266928..1267569 (-) 642 WP_045001806.1 cystathionine beta-lyase -
  BSR20_RS05710 (BSR20_05785) hflX 1267562..1268800 (-) 1239 WP_045772093.1 GTPase HflX -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82204.45 Da        Isoelectric Point: 4.3426

>NTDB_id=173748 BSR20_RS05680 WP_045772090.1 1262078..1264279(-) (recJ) [Streptococcus salivarius strain ICDC3]
MITSTYDWKINTKEPDAGFFKLAKEHGLAETAAKIAYERGVTTEEALEDFLKADLSYLHDPYLLHDMDKAVARIRRAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPAQLPDAFAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQKIFDEAMTMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGQLSDILCHYVYDNEIDTSAKNTLNLDEELQLSELGLDTIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGHLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLEDARVD
GVQLFDFRSKNMALPEGLPTVEEAADTEPAVVLSTLPESATELKEWFEGKDFQAIYFKNSIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEDSQIFQNLKRLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=173748 BSR20_RS05680 WP_045772090.1 1262078..1264279(-) (recJ) [Streptococcus salivarius strain ICDC3]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACATGG
GCTGGCAGAAACAGCAGCCAAGATTGCTTATGAACGTGGCGTGACGACAGAAGAGGCCCTTGAAGACTTTCTAAAGGCTG
ATCTATCATACCTTCATGACCCTTATCTTCTTCATGATATGGACAAGGCGGTTGCTAGAATTCGTCGGGCCATTGAAAAT
TATGAACAAATCTTAGTCTATGGGGACTATGATGCAGATGGGATGACATCAGCATCGATTGTCAAGGAAGCCCTTGAAAT
GATGGGTGCCGAGGCTCGAGTCTATTTGCCCAACCGTTTTACAGATGGTTATGGGCCAAACGAAAGTGTCTATAAGTATT
TCATTGAGCAGGAAGGCATTTCACTTATTGTTACAGTGGATAATGGAGTAGCGGGTAATGAGGCTATTGCTTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGACCACCATAGTATGCCGGCACAGCTTCCAGATGCCTTTGCCATTGTCCATCC
AGAGCATCCAGATGCCGATTATCCTTTTAAGTATTTGGCAGGATGTGGTGTAGCTTTCAAATTGGCAACGGCCCTCCTTG
AAACTATTCCTACAGAGATGTTGGACTTGGTAGCCATTGGTACCATTGCTGATATGGTTAGCCTTACGGATGAAAATCGT
ATTATGGTCAAGGTCGGCCTGGAAATTCTCAAGACTACTGAGCGTATCGGGCTTCAAGAATTGCTCCGCATTTCAGATGT
GGACCCTACAACGATTTCCGAAGAAACGGTAGGCTTCAAACTGGCTCCTCAACTCAATGCCTTGGGACGCTTAGATGATC
CAAATCCAGCCATTGAACTACTGACCGGGTTTGACGATGAGGAAGCTCAAGCCATTGCTCTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAAAATCTTTGATGAAGCTATGACCATGGTAGACTTGGACAAACCAGTTCAGGTTTT
GGCCAAGGAAGGTTGGCATCCTGGTGTTCTAGGTATTGTAGCGGGGCGCATCATGGAACAAATCAGCCAGACAGTAGTGG
TTTTGAATATTGAAGATGGTCTGGCTAAGGGTTCAGCCCGTAGTTTGGAATCAATCAATATCTTCCATGCCCTTGATGAC
CACCGAGACATCTTTACTGCTTTTGGAGGACACGCTGGAGCCGCTGGGATGACCCTTCCGGAGGAAAATCTTGGTCAACT
CTCAGATATTTTGTGTCATTATGTCTACGATAATGAGATTGATACAAGTGCCAAAAATACGCTTAATTTAGACGAGGAGC
TCCAACTCAGCGAGCTTGGCTTGGATACTATTAAGAGTCTAGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGGACAATGGGACAAAATGGAGCCCATCTTAAGTTTAAGGTGAA
GCAAGGCAAGGATAGCTTTGACGTTGTCGCTTTTAATAAAGGTCATTTGCTTCAAGAATTTCAACAAGCTCAAGGTTTGG
AATTGGCAGTGACCTTGTCTGTTAATGTTTGGAATGGTCAGACAACGCTACAGCTCATGCTAGAAGATGCGCGTGTGGAT
GGTGTTCAATTATTTGATTTCCGCTCAAAAAATATGGCACTGCCTGAAGGTCTACCAACGGTAGAAGAAGCAGCAGACAC
AGAGCCTGCGGTTGTCCTCAGTACCCTACCTGAATCAGCTACAGAATTAAAAGAGTGGTTTGAAGGTAAAGATTTCCAAG
CTATCTATTTTAAAAATAGTATTAAGGAAGCCTATTATCTGACAGGTTATGGAACAAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTACCAATTCCCAGAATTCGATGTTCGCTATAAATTGGATGAACTCAGTCATTACCTTAAAATCGACAAGAT
TCTTCTGATTAAGATGATTCAAATCTTTGATGAATTGGATTTTGTGACTATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAAAAACGTGAGATTGAGGACAGTCAGATTTTCCAAAATCTGAAACGACTCGTTAAGTTCCAAGAACTTATGGCT
CTGGGAACTCCACAGGAAATTTATGATTGGCTGTATAAGTAG

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-431)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-731)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.799

100

0.681
  recJ Bacillus subtilis subsp. subtilis str. 168

38.059

100

0.407