Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   BSR20_RS04850 Genome accession   NZ_CP018189
Coordinates   1092542..1093612 (-) Length   356 a.a.
NCBI ID   WP_045772426.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1087542..1098612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS04835 (BSR20_04890) pstB 1088265..1089023 (+) 759 WP_156209722.1 phosphate ABC transporter ATP-binding protein PstB -
  BSR20_RS04840 (BSR20_04895) phoU 1089052..1089705 (+) 654 WP_004182526.1 phosphate signaling complex protein PhoU -
  BSR20_RS04845 (BSR20_04900) - 1089839..1092379 (+) 2541 WP_156209724.1 M1 family metallopeptidase -
  BSR20_RS04850 (BSR20_04905) xerS 1092542..1093612 (-) 1071 WP_045772426.1 tyrosine recombinase XerS Machinery gene
  BSR20_RS04855 (BSR20_04910) - 1093868..1094857 (-) 990 WP_002885026.1 lipoate--protein ligase -
  BSR20_RS04860 - 1094981..1096108 (+) 1128 WP_083319686.1 hypothetical protein -
  BSR20_RS04865 (BSR20_04925) glgP 1096218..1098479 (-) 2262 WP_156209726.1 glycogen/starch/alpha-glucan family phosphorylase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41441.58 Da        Isoelectric Point: 9.3734

>NTDB_id=173740 BSR20_RS04850 WP_045772426.1 1092542..1093612(-) (xerS) [Streptococcus salivarius strain ICDC3]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIESGISDADDIASIDIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQMTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDS
VNVASFAKPYLETYLSIRDKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=173740 BSR20_RS04850 WP_045772426.1 1092542..1093612(-) (xerS) [Streptococcus salivarius strain ICDC3]
ATGAAACGTGAACTCTTACTCGAAAAAATTGAGGAATACAAATCTCTAATGCCCTGGTTTGTTCTTGAGTATTATCAGTC
TAAACTATCGGTACCGTATTCTTTTACGACTTTATACGAATACCTTAAGGAATATAAACGCTTTTTTGACTGGTTGATTG
AGTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTGACATCAAAACCTTGGAAAATCTAACTAAAAAAGATATGGAG
TCATTTGTGCTTTATCTACGTGAACGTCCATCTTTGAATACCTATTCCAAGAAACAGGGTGTCTCTCAAATGACCATTAA
TCGTACACTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACCGAGGAGGTCGAGGGTCCTGACGGTGAGCCGTATTTCT
ATCGTAACGTTATGAAAAAAGTTTCTACTAAGAAAAAGAAAGAAACTCTAGCTGCACGTGCTGAGAATATCAAACAGAAA
CTCTTTCTAGGCGATGAAACCATGGAATTCCTTGATTATGTAGAAAATGAATACGAAGTCAAACTCTCAAATCGCGCTAA
ATCATCGTTTTATAAGAATAAAGAACGTGATTTAGCTATCATTGCCTTGCTACTGGCTTCAGGTGTTCGACTTTCTGAGG
CTGTTAATTTGGATCTTAAAGATATCAATCTAAAAATGATGGTCATCGACGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTTAATGTAGCAAGTTTTGCAAAACCGTATCTTGAAACTTATCTTAGTATACGTGATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCCCTCTTTTTAACGGAATATCGAGGGGTCCCAAACCGTATTGATGCTTCAAGTATCGAAAAGATGGTTGCCA
AATATTCTCAGGATTTCAAGATACGTGTGACTCCCCATAAACTACGACATACTTTGGCAACACGTCTTTATGATGCTACC
AAGTCTCAAGTTTTAGTTAGTCACCAACTTGGCCATGCTTCCACTCAAGTTACCGATCTATATACGCATATTGTTAATGA
TGAGCAAAAAAATGCTCTAGACAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(183-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834

Multiple sequence alignment