Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   BSR19_RS05435 Genome accession   NZ_CP018187
Coordinates   1097654..1098724 (+) Length   356 a.a.
NCBI ID   WP_156246707.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1092654..1103724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS05420 (BSR19_05490) glgP 1092777..1095038 (+) 2262 WP_060775862.1 glycogen/starch/alpha-glucan family phosphorylase -
  BSR19_RS05425 - 1095147..1096274 (-) 1128 WP_230315718.1 hypothetical protein -
  BSR19_RS05430 (BSR19_05505) - 1096398..1097387 (+) 990 WP_049545534.1 lipoate--protein ligase -
  BSR19_RS05435 (BSR19_05510) xerS 1097654..1098724 (+) 1071 WP_156246707.1 tyrosine recombinase XerS Machinery gene
  BSR19_RS05440 (BSR19_05515) - 1098887..1101427 (-) 2541 WP_156246708.1 M1 family metallopeptidase -
  BSR19_RS05445 (BSR19_05520) phoU 1101561..1102214 (-) 654 WP_004182526.1 phosphate signaling complex protein PhoU -
  BSR19_RS05450 (BSR19_05525) pstB 1102243..1103001 (-) 759 WP_002890956.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41458.56 Da        Isoelectric Point: 9.3770

>NTDB_id=173628 BSR19_RS05435 WP_156246707.1 1097654..1098724(+) (xerS) [Streptococcus salivarius strain ICDC2]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIDSGISDAHDIALIDIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDS
VNVASFAKPYLENYLSIRDKRYNAEKQDLALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=173628 BSR19_RS05435 WP_156246707.1 1097654..1098724(+) (xerS) [Streptococcus salivarius strain ICDC2]
ATGAAACGTGAACTCTTACTCGAAAAAATTGAAGAATACAAATCTCTTATGCCTTGGTTTGTCTTAGAGTATTATCAGTC
TAAACTATCGGTTCCATATTCTTTTACGACCTTATACGAATACCTTAAGGAATATAAACGCTTTTTTGACTGGTTGATTG
ACTCAGGTATTTCAGATGCTCATGATATTGCCTTAATTGACATCAAAACCCTGGAAAATCTAACTAAAAAGGACATGGAG
TCATTTGTGCTCTATCTACGTGAACGTCCGTCCTTAAATACCTATTCCAAGAAACAGGGAGTTTCTCAAACAACCATTAA
CCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGTCCTGACGGTGAGCCATATTTCT
ATCGTAACGTCATGAAAAAAGTTTCAACTAAGAAAAAGAAAGAAACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGATGAAACCATGGAATTTCTTGATTATGTCGAAAACGAATACGAAGTTAAGCTCTCAAATCGCGCAAA
ATCTTCGTTTTACAAGAATAAAGAACGTGATTTAGCGATAATAGCCTTGCTACTGGCTTCAGGCGTTCGACTTTCTGAGG
CTGTTAACCTGGACCTTAAAGATATCAATCTGAAAATGATGGTCATTGATGTTACTCGAAAAGGTGGCAAACGAGACTCA
GTTAATGTAGCAAGTTTTGCAAAACCTTATCTTGAGAATTATCTTAGTATACGTGATAAACGCTATAATGCTGAAAAGCA
AGACCTTGCCCTATTTTTAACGGAATATCGAGGTGTTCCAAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCCA
AATATTCTCAGGATTTCAAGATACGTGTGACTCCCCATAAACTACGACACACTCTGGCAACACGTCTTTATGATGCTACC
AAGTCTCAAGTTTTAGTTAGTCATCAGCTTGGTCATGCTTCCACTCAGGTCACTGATCTTTATACTCATATCGTCAATGA
TGAGCAAAAAAATGCTCTAGACAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(183-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.146

100

0.831