Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BSR19_RS04570 Genome accession   NZ_CP018187
Coordinates   902948..905149 (+) Length   733 a.a.
NCBI ID   WP_156246649.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 897948..910149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS04540 (BSR19_04550) hflX 898429..899667 (+) 1239 WP_037598873.1 GTPase HflX -
  BSR19_RS04545 (BSR19_04555) - 899660..900301 (+) 642 WP_156246647.1 cystathionine beta-lyase -
  BSR19_RS04550 (BSR19_04560) rnz 900331..901260 (+) 930 WP_002884122.1 ribonuclease Z -
  BSR19_RS04555 (BSR19_04565) - 901260..902027 (+) 768 WP_156246648.1 SDR family NAD(P)-dependent oxidoreductase -
  BSR19_RS11865 (BSR19_04570) - 902099..902236 (+) 138 Protein_850 class I SAM-dependent methyltransferase -
  BSR19_RS04565 (BSR19_04575) - 902238..902642 (+) 405 WP_064521295.1 GNAT family N-acetyltransferase -
  BSR19_RS04570 (BSR19_04580) recJ 902948..905149 (+) 2202 WP_156246649.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BSR19_RS04575 (BSR19_04585) - 905267..905785 (+) 519 WP_004182660.1 adenine phosphoribosyltransferase -
  BSR19_RS04580 (BSR19_04590) metA 905958..906902 (+) 945 WP_014634315.1 homoserine O-acetyltransferase MetA -
  BSR19_RS04585 (BSR19_04595) - 906974..907672 (+) 699 WP_004182658.1 DnaD domain-containing protein -
  BSR19_RS04590 (BSR19_04600) nth 907672..908316 (+) 645 WP_002884001.1 endonuclease III -
  BSR19_RS04595 (BSR19_04605) - 908444..909205 (+) 762 WP_064521298.1 hypothetical protein -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82078.20 Da        Isoelectric Point: 4.3071

>NTDB_id=173620 BSR19_RS04570 WP_156246649.1 902948..905149(+) (recJ) [Streptococcus salivarius strain ICDC2]
MITSTYDWKINTKEPDAGFFKLAKEHGLAETAAKIAYERGVTTEEALEDFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPAQLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQKIFDEAMTMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGQLSDILCNYVYDNDIDTTAKNTLNLDEELQLSELSLDTIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKDSFDVAAFNKGNLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLEDARVD
GVQLFDFRSKNMALPEGLPSVEEAADTEPAVILNTLPESATELKEWFEGKDFQAIYFKNSIKEAYYLTGYGTRGQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEDSQIFQDLKRLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=173620 BSR19_RS04570 WP_156246649.1 902948..905149(+) (recJ) [Streptococcus salivarius strain ICDC2]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCTAAAGAACATGG
ACTGGCAGAAACAGCAGCTAAGATTGCCTATGAACGTGGCGTGACGACAGAAGAGGCCCTTGAAGACTTTCTTAAGGCTG
ATTTATCACACCTTCATGATCCATATCTTCTTCATGATATGGACAAGGCGGTTGCTAGAATTCGTCAGGCCATTGAAAAT
TACGAGCAAATCTTAGTCTATGGAGACTATGATGCGGATGGGATGACATCAGCATCGATTGTCAAGGAAGCCCTTGAAAT
GATGGGCGCTGAGGCTCGAGTCTATTTGCCTAACCGTTTCACAGATGGTTATGGGCCAAACGAAAGTGTCTATAAGTATT
TCATTGAGCAGGAAGGCATTTCACTCATTGTTACAGTGGATAATGGGGTTGCGGGAAATGAAGCTATTGCTTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGACCACCATAGTATGCCGGCACAGCTTCCAGATGCCTATGCCATTGTCCATCC
AGAGCATCCAGATGCCGATTATCCTTTTAAGTATTTGGCAGGATGTGGTGTAGCTTTCAAATTGGCAACGGCCCTCCTTG
AAACTATTCCTACAGAGATGTTGGATTTGGTAGCCATTGGTACCATTGCTGATATGGTTAGCTTAACGGATGAAAATCGT
ATTATGGTCAAGGTCGGCCTGGAAATTCTCAAGACTACTGAGCGTATTGGGCTTCAAGAATTGCTCCGCATCTCAGATGT
AGACCCAACAACGATTTCCGAAGAAACGGTAGGCTTCAAACTGGCTCCTCAACTCAATGCCTTGGGACGCTTAGATGATC
CAAATCCAGCCATTGAACTGTTGACCGGATTTGACGATGAGGAAGCACAAGCCATTGCTCTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAAAATCTTTGATGAAGCTATGACCATGGTAGACTTGGACAAACCAGTTCAGGTTTT
GGCCAAGGAAGGTTGGCATCCTGGTGTTCTAGGTATTGTAGCGGGGCGCATCATGGAACAAATCAGCCAGACAGTAGTGG
TTTTGAATATTGAAGATGGTCTGGCTAAGGGTTCAGCCCGTAGTTTGGAATCTATCAATATCTTCCATGCGCTTGATGAC
CACCGAGACATCTTTACTGCATTTGGAGGACACGCTGGAGCCGCTGGGATGACCCTTCCGGAGGAAAATCTTGGTCAACT
CTCAGATATTTTGTGCAATTATGTCTACGATAATGACATTGATACGACTGCCAAAAATACGCTTAATTTAGACGAGGAGC
TCCAACTCAGTGAGCTTAGCTTGGATACCATTAAGAGCCTTGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGGACAATGGGACAAAATGGAGCCCATCTTAAGTTTAAGGTGAA
GCAAGGCAAGGATAGCTTTGACGTTGCCGCTTTTAATAAAGGTAATCTGCTTCAAGAATTTCAACAAGCTCAAGGTTTGG
AATTGGCAGTGACCTTGTCTGTTAATGTTTGGAATGGTCAGACAACGCTACAGCTCATGCTAGAAGATGCGCGTGTAGAT
GGTGTTCAATTATTTGATTTCCGCTCAAAAAATATGGCACTTCCTGAAGGTCTACCATCGGTAGAAGAAGCAGCAGACAC
AGAGCCTGCGGTTATCCTCAACACCCTACCTGAATCAGCGACGGAATTAAAAGAGTGGTTTGAAGGTAAAGATTTCCAGG
CTATCTATTTTAAAAATAGTATAAAGGAAGCCTATTATCTGACAGGTTATGGAACAAGAGGGCAATTTGCAAGGCTCTAT
AAAACCATTTACCAATTCCCAGAATTCGATGTTCGCTATAAATTGGATGAACTCAGTCATTACCTTAAAATCGACAAGAT
TCTTCTGATTAAGATGATTCAAATCTTTGATGAATTGGATTTTGTGACTATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAAAAACGTGAGATTGAGGACAGTCAGATTTTCCAAGATCTGAAACGACTAGTTAAGTTCCAAGAACTCATGGCT
TTGGGAACACCACAGGAAATTTATGATTGGCTTTATAAGTAG

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(582-731)

DHHA1 domain (DHHA1)

(317-430)

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.799

100

0.681
  recJ Bacillus subtilis subsp. subtilis str. 168

37.709

100

0.4