Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BSR19_RS00200 Genome accession   NZ_CP018187
Coordinates   26685..27458 (+) Length   257 a.a.
NCBI ID   WP_060972875.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 21685..32458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS00180 (BSR19_00180) mreD 22128..22652 (+) 525 WP_156246282.1 rod shape-determining protein MreD -
  BSR19_RS00185 (BSR19_00185) - 22737..24254 (+) 1518 WP_156246283.1 CHAP domain-containing protein -
  BSR19_RS00190 (BSR19_00190) - 24466..25431 (+) 966 WP_002886286.1 ribose-phosphate diphosphokinase -
  BSR19_RS00195 (BSR19_00195) - 25523..26698 (+) 1176 WP_049545078.1 pyridoxal phosphate-dependent aminotransferase -
  BSR19_RS00200 (BSR19_00200) recO 26685..27458 (+) 774 WP_060972875.1 DNA repair protein RecO Machinery gene
  BSR19_RS00205 (BSR19_00205) plsX 27670..28674 (+) 1005 WP_013989885.1 phosphate acyltransferase PlsX -
  BSR19_RS00210 (BSR19_00210) - 28674..28919 (+) 246 WP_002889565.1 phosphopantetheine-binding protein -
  BSR19_RS00215 (BSR19_00215) purC 29174..29881 (+) 708 WP_060972876.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29685.91 Da        Isoelectric Point: 5.2141

>NTDB_id=173576 BSR19_RS00200 WP_060972875.1 26685..27458(+) (recO) [Streptococcus salivarius strain ICDC2]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGAGKLSAVIQPLTIAKFMITVNDEGLSFIEDYSQAESFKE
ITGDIFKLSYATYLAALTDATIADGVTDAQLFVFLEKTLELMEEGLDHEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSFKFSGLLCPNHFAEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDDMKRKLRYFIDDLYDNYVGIHLKSKKFI
DNLNSWGHIMNKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=173576 BSR19_RS00200 WP_060972875.1 26685..27458(+) (recO) [Streptococcus salivarius strain ICDC2]
ATGCAGAAGCTTGAGAGTAGAGGGCTTGTCCTCTTCAATCGTAATTATCGTGAGAATGATAAACTAGTTAAAATTTTTAC
CGAGCAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGGCAGGTAAATTAAGTGCTGTCATTCAACCTTTGACCA
TCGCTAAATTCATGATAACTGTAAATGATGAAGGTCTATCTTTCATAGAAGATTATAGCCAGGCAGAGTCCTTCAAGGAA
ATTACAGGCGATATTTTCAAGCTGTCTTATGCGACTTATTTGGCTGCATTGACAGATGCTACTATTGCTGATGGTGTGAC
AGATGCGCAATTATTTGTATTCTTGGAGAAGACGCTTGAATTAATGGAAGAAGGCTTGGATCATGAAATATTGACTAATA
TCTTTGAGATTCAGGTTTTAGACCGTTTCGGCGTACGCTTGAATTTTCACGAGTGTGTCTTTTGTCATCGTGTAGGCCTT
CCTTTTGATTTCTCGTTTAAGTTCTCGGGGCTACTTTGTCCAAATCACTTTGCAGAGGATGAAAGGCGTAGTCACTTGGA
CCCTAATGTGCCTTATCTTTTAGATCGTTTTCAGGGGCTTTCCTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGACA
TGAAACGAAAGCTACGATATTTTATCGATGACCTCTATGATAATTATGTTGGAATACATCTTAAAAGTAAGAAATTTATT
GATAATCTAAATTCTTGGGGCCATATTATGAATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.66

98.444

0.607