Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   A0W68_RS05965 Genome accession   NZ_CP014744
Coordinates   1121295..1122254 (+) Length   319 a.a.
NCBI ID   WP_002875425.1    Uniprot ID   -
Organism   Campylobacter jejuni strain OD267     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1102801..1134475 1121295..1122254 within 0


Gene organization within MGE regions


Location: 1102801..1134475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0W68_RS05875 (A0W68_05875) pglI 1102801..1103730 (-) 930 WP_061577900.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  A0W68_RS05880 (A0W68_05880) pglH 1103723..1104802 (-) 1080 WP_079760282.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  A0W68_RS05885 (A0W68_05885) pglK 1104799..1106493 (-) 1695 WP_002890469.1 ABC-type lipopolysaccharide transporter PglK -
  A0W68_RS05890 (A0W68_05890) galE 1106487..1107473 (-) 987 WP_002853529.1 UDP-glucose 4-epimerase GalE -
  A0W68_RS05895 (A0W68_05895) - 1107531..1108325 (-) 795 WP_002853812.1 3'-5' exonuclease -
  A0W68_RS05900 (A0W68_05900) waaC 1108391..1109419 (+) 1029 WP_002855693.1 lipopolysaccharide heptosyltransferase I -
  A0W68_RS05905 (A0W68_05905) htrB 1109409..1110296 (+) 888 WP_002890465.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  A0W68_RS05910 (A0W68_05910) - 1110293..1111840 (+) 1548 WP_002858148.1 glycosyltransferase -
  A0W68_RS05915 (A0W68_05915) - 1111844..1113016 (+) 1173 WP_002858013.1 glycosyltransferase family 2 protein -
  A0W68_RS05920 (A0W68_05920) - 1113000..1113995 (-) 996 WP_002858358.1 capsular polysaccharide synthesis protein -
  A0W68_RS05925 (A0W68_05925) wlaN 1114027..1114912 (-) 886 Protein_1140 beta-1,3 galactosyltransferase -
  A0W68_RS05930 (A0W68_05930) cstIII 1114967..1115851 (+) 885 WP_002858290.1 alpha-2,3-sialyltransferase -
  A0W68_RS05935 (A0W68_05935) neuB1 1115832..1116863 (+) 1032 WP_002858213.1 sialic acid synthase -
  A0W68_RS05940 (A0W68_05940) neuC 1116860..1117975 (+) 1116 WP_002858400.1 UDP-N-acetylglucosamine 2-epimerase -
  A0W68_RS10375 (A0W68_05945) - 1117972..1118838 (+) 867 Protein_1144 beta-1,4-N-acetylgalactosaminyltransferase -
  A0W68_RS10380 (A0W68_05950) - 1118920..1119582 (+) 663 WP_002881429.1 N-acylneuraminate cytidylyltransferase -
  A0W68_RS05955 (A0W68_05955) - 1119577..1120428 (-) 852 WP_043020460.1 glycosyltransferase -
  A0W68_RS05960 (A0W68_05960) waaV 1120412..1121236 (-) 825 WP_002858096.1 glycosyltransferase family 2 protein -
  A0W68_RS05965 (A0W68_05965) waaF 1121295..1122254 (+) 960 WP_002875425.1 lipopolysaccharide heptosyltransferase II Regulator
  A0W68_RS05970 (A0W68_05970) gmhA 1122235..1122795 (-) 561 WP_002858021.1 D-sedoheptulose 7-phosphate isomerase -
  A0W68_RS05975 (A0W68_05975) rfaE1 1122792..1124177 (-) 1386 WP_002890180.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  A0W68_RS05980 (A0W68_05980) rfaD 1124170..1125123 (-) 954 WP_002852832.1 ADP-glyceromanno-heptose 6-epimerase -
  A0W68_RS05985 (A0W68_05985) gmhB 1125124..1125684 (-) 561 WP_002878815.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  A0W68_RS05990 (A0W68_05990) - 1125766..1126068 (+) 303 WP_002852762.1 cytochrome c -
  A0W68_RS05995 (A0W68_05995) ccoS 1126091..1126297 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  A0W68_RS06000 (A0W68_06000) - 1126294..1128651 (-) 2358 WP_079760271.1 heavy metal translocating P-type ATPase -
  A0W68_RS06005 (A0W68_06005) rho 1128760..1130058 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  A0W68_RS06010 (A0W68_06010) dnaX 1130062..1131591 (+) 1530 WP_002875420.1 DNA polymerase III subunit gamma/tau -
  A0W68_RS06015 (A0W68_06015) - 1131588..1131815 (-) 228 WP_002868592.1 DUF2165 family protein -
  A0W68_RS06025 (A0W68_06025) - 1131931..1132110 (-) 180 WP_002868591.1 DUF2165 family protein -
  A0W68_RS06030 (A0W68_06030) copA 1132182..1134281 (-) 2100 WP_002875419.1 copper-translocating P-type ATPase CopA -
  A0W68_RS06035 (A0W68_06035) - 1134281..1134475 (-) 195 WP_002852760.1 cation transporter -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36734.30 Da        Isoelectric Point: 10.2412

>NTDB_id=173539 A0W68_RS05965 WP_002875425.1 1121295..1122254(+) (waaF) [Campylobacter jejuni strain OD267]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=173539 A0W68_RS05965 WP_002875425.1 1121295..1122254(+) (waaF) [Campylobacter jejuni strain OD267]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment