Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   BSR14_RS07655 Genome accession   NZ_CP018186
Coordinates   1674269..1676254 (-) Length   661 a.a.
NCBI ID   WP_156209905.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1669269..1681254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR14_RS07625 (BSR14_07695) rsmI 1670489..1671355 (-) 867 WP_110981179.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BSR14_RS07630 (BSR14_07700) yabA 1671358..1671678 (-) 321 WP_002887582.1 DNA replication initiation control protein YabA -
  BSR14_RS07635 (BSR14_07705) yaaT 1671665..1672471 (-) 807 WP_156209903.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  BSR14_RS07640 (BSR14_07710) - 1672468..1673343 (-) 876 WP_045771941.1 DNA polymerase III subunit delta' -
  BSR14_RS07645 (BSR14_07715) tmk 1673352..1673981 (-) 630 WP_045771942.1 dTMP kinase -
  BSR14_RS07655 (BSR14_07725) recP/tkt 1674269..1676254 (-) 1986 WP_156209905.1 transketolase Machinery gene
  BSR14_RS07660 (BSR14_07730) tpiA 1676520..1677278 (-) 759 WP_002890214.1 triose-phosphate isomerase -
  BSR14_RS07665 (BSR14_07735) tuf 1677533..1678729 (-) 1197 WP_002890213.1 elongation factor Tu -
  BSR14_RS07670 (BSR14_07740) ftsW 1678966..1680246 (-) 1281 WP_045771944.1 cell division peptidoglycan polymerase FtsW -
  BSR14_RS07675 (BSR14_07745) - 1680507..1680923 (-) 417 WP_002890211.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70803.53 Da        Isoelectric Point: 4.8481

>NTDB_id=173538 BSR14_RS07655 WP_156209905.1 1674269..1676254(-) (recP/tkt) [Streptococcus salivarius strain ICDC1]
MTFDAIDQMAVSTIRSLSIEAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LSGYDVTMDDLKNFRQWGSKTPGHPEVNHTDGVEATSGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKAKFEAYGWQHILVKDGNDLEAIAKAIEEAKAETD
KPSIIEVKTIIGYGAEGQGTSAVHGAPIGQDGIDHAKGVYGYDAPAFTVPDEVARRFEAGIKFRGEAAENAWQTKFAEYE
AAYPELVAEYKAAFANEPAHVELSAHELGSAVASRVSSQQAIQQISKQVPSFWGGSADLSASNNTMVKAESDFQPDNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPVTYVMTHDSVAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETERPTMLVLTRQNLPVLDGTAENAEAGVNKGAYIISEAKGDLDGIIIATGSEV
KLALDTQAALEAEGVHVRVVSMPSQNLFDEQDAAYKEEVLPAAVTKRLAIEAGTSFGWGKYVGLAGKTLTIDTWGASAPG
DRIFKEYGFTVENASQLYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=173538 BSR14_RS07655 WP_156209905.1 1674269..1676254(-) (recP/tkt) [Streptococcus salivarius strain ICDC1]
ATGACTTTTGATGCAATTGACCAAATGGCGGTCAGCACTATTCGTTCGCTTTCGATCGAGGCAATTCAAGCCGCGAATTC
TGGGCACCCAGGTCTTCCTATGGGTGCAGCGCCGATGGCTTATGTGCTTTGGAACCATGTGATGAATGTTAATCCAAAGA
CTAGCCGCAACTGGACAAACCGTGACCGTTTTGTTCTTTCTGCAGGTCATGGTTCTGCCTTACTTTATAGTCTCTTGCAC
CTTTCTGGCTACGACGTGACAATGGACGACTTGAAGAACTTCCGTCAATGGGGATCTAAGACTCCAGGTCACCCTGAAGT
TAACCATACAGATGGTGTTGAAGCGACATCAGGTCCTCTTGGTCAAGGGATTGCTAATGCTGTAGGTATGGCAATGGCTG
AAGCACACTTGGCAGCTAAATTTAACAAACCTGGTTTTGATATTGTTGACCATTATACTTATGCCCTCCATGGCGATGGT
TGTTTGATGGAAGGTGTTTCTCAAGAAGCTGCTAGTCTTGCTGGTCACCTTAAACTTGGTAAGTTGGTACTTCTTTACGA
TTCAAATGATATTTCACTTGATGGACCAACTTCAATGGCTTTCACTGAAGATGTTAAGGCTAAGTTTGAAGCTTATGGTT
GGCAACACATTCTTGTTAAAGATGGTAATGATTTGGAAGCTATTGCTAAAGCTATCGAAGAAGCTAAAGCTGAGACAGAT
AAACCATCTATTATCGAAGTTAAGACAATCATTGGTTACGGAGCTGAAGGACAAGGAACATCAGCTGTCCACGGGGCTCC
AATTGGTCAAGACGGTATTGATCATGCAAAAGGTGTTTATGGTTATGATGCACCGGCATTTACAGTTCCAGATGAAGTTG
CTCGTCGTTTCGAAGCTGGTATTAAATTCCGTGGTGAAGCTGCTGAAAATGCTTGGCAAACTAAATTTGCAGAATATGAA
GCTGCTTACCCAGAATTGGTTGCGGAATACAAGGCTGCCTTTGCGAATGAACCTGCACATGTTGAGTTGAGTGCTCATGA
GTTAGGTTCAGCAGTAGCTAGTCGTGTGTCAAGCCAACAAGCTATCCAACAGATTTCTAAACAAGTTCCTTCATTCTGGG
GAGGTTCAGCAGACCTTTCAGCTTCTAACAATACTATGGTTAAGGCTGAGTCTGATTTCCAACCAGACAACTATGCTGGA
CGTAATATTTGGTTCGGTGTACGTGAGTTTGCTATGGCTGCAGCGATGAATGGTATTGCTCTTCATGGTGGTACTCGTGT
TTATGGTGGTACTTTCTTCGTCTTCTCAAACTACTTGCTTCCAGCAGTACGTATGGCAGCTCTTCAAAACTTGCCAGTAA
CTTATGTTATGACTCACGACTCAGTAGCAGTTGGTGAAGATGGACCTACTCACGAACCAATCGAACAATTGGCAAGTGTG
CGTTCAATGCCTAACCTTAACGTTATCCGTCCTGCAGATGGTAATGAAACTAATGCTGCGTGGAAACGTGCCTTGGCTGA
GACTGAACGTCCAACAATGCTAGTTTTGACACGTCAAAACTTGCCAGTCCTTGATGGTACAGCTGAAAATGCCGAAGCTG
GTGTCAATAAAGGGGCTTACATCATCTCAGAAGCTAAAGGTGATCTTGATGGTATCATCATTGCGACAGGTTCTGAAGTG
AAATTGGCTCTTGATACTCAAGCGGCTCTTGAAGCTGAAGGAGTGCATGTCCGTGTTGTTTCAATGCCATCACAAAATCT
CTTTGATGAACAAGATGCTGCATATAAAGAAGAAGTTCTTCCAGCAGCTGTGACAAAACGTTTGGCTATCGAAGCTGGAA
CTAGCTTTGGTTGGGGCAAATATGTTGGTCTTGCAGGTAAAACACTTACTATTGATACTTGGGGTGCCTCAGCACCTGGT
GACCGTATCTTTAAAGAATATGGATTCACTGTTGAAAATGCAAGTCAACTTTACAAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(552-652)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.383

99.546

0.561