Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BSR14_RS05625 Genome accession   NZ_CP018186
Coordinates   1252472..1254142 (-) Length   556 a.a.
NCBI ID   WP_156209770.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1247472..1259142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR14_RS05590 (BSR14_05665) - 1247515..1248207 (-) 693 WP_004182646.1 phosphoglycerate mutase -
  BSR14_RS05595 (BSR14_05670) - 1248464..1249399 (+) 936 WP_004182647.1 dihydroorotate oxidase -
  BSR14_RS05600 (BSR14_05675) - 1249461..1249661 (-) 201 WP_002883994.1 hypothetical protein -
  BSR14_RS05605 (BSR14_05680) - 1249721..1249996 (-) 276 WP_002884048.1 HU family DNA-binding protein -
  BSR14_RS05610 (BSR14_05685) - 1250133..1250705 (-) 573 WP_156209768.1 YpmS family protein -
  BSR14_RS05615 (BSR14_05690) - 1250698..1251573 (-) 876 WP_004182649.1 SGNH/GDSL hydrolase family protein -
  BSR14_RS05620 (BSR14_05695) - 1251566..1252402 (-) 837 WP_002884124.1 DegV family protein -
  BSR14_RS05625 (BSR14_05700) recN 1252472..1254142 (-) 1671 WP_156209770.1 DNA repair protein RecN Machinery gene
  BSR14_RS05630 (BSR14_05705) - 1254151..1254597 (-) 447 WP_004182652.1 arginine repressor -
  BSR14_RS05635 (BSR14_05710) - 1254584..1255411 (-) 828 WP_004182653.1 TlyA family RNA methyltransferase -
  BSR14_RS05640 (BSR14_05715) - 1255404..1256276 (-) 873 WP_045768845.1 polyprenyl synthetase family protein -
  BSR14_RS05645 (BSR14_05720) - 1256276..1256491 (-) 216 WP_002888853.1 exodeoxyribonuclease VII small subunit -
  BSR14_RS05650 (BSR14_05725) xseA 1256481..1257809 (-) 1329 WP_004182655.1 exodeoxyribonuclease VII large subunit -
  BSR14_RS05655 (BSR14_05730) - 1257996..1258757 (-) 762 WP_004182656.1 hypothetical protein -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62325.42 Da        Isoelectric Point: 4.5632

>NTDB_id=173523 BSR14_RS05625 WP_156209770.1 1252472..1254142(-) (recN) [Streptococcus salivarius strain ICDC1]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVIRHSASKAEIQGFFSIEQNPALVSIL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTTLKAVGHFLVDIHGQHDQEELMKPALHITMLDAFGDKEFFQTKKE
YQEYFDRYRELRKAVLEKQKNEQEHKARIEMLAFQIAEIEAVSLKSGEDLALMKERDKLLNHKQIADTLTNAYVMLDNED
FSSLSNVRSAMNDLQSLEEYDSDYKELSGNLSEAYYVLEDVTKQLGDLLDNLDFDAGRLQEIEHRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQTARHQIATALEAEIKNELCDLYMDKADFKVTFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVQEIAKMLAGDNVTEAALSQARALLKVDDSL

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=173523 BSR14_RS05625 WP_156209770.1 1252472..1254142(-) (recN) [Streptococcus salivarius strain ICDC1]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAGATTTCTCTAAACTTTGAGAATGGTATGACCGTCCT
TACTGGTGAAACAGGTGCTGGTAAGTCCATTATTATAGATGCCATGAATCTTATGTTGGGCGCACGTGCTTCTAGCGAAG
TCATCCGTCATTCAGCATCTAAGGCTGAGATTCAGGGCTTCTTTTCAATCGAACAAAATCCTGCCTTGGTTAGTATCTTG
GAAGATAATGGGATTCCTGTCGAGGATGAATTGATTATCCGTCGTGAAATCTTCCAAAATGGTAGAAGTGTTAGTCGCAT
CAATGGACAGATGGTCAATTTAACGACACTTAAAGCCGTTGGGCACTTCTTGGTAGATATCCATGGACAACATGACCAGG
AAGAGCTTATGAAACCTGCTCTGCATATTACCATGCTTGATGCCTTTGGTGACAAGGAATTTTTCCAAACTAAGAAAGAA
TACCAAGAGTATTTTGACCGCTATCGTGAGTTAAGAAAAGCCGTTCTTGAAAAGCAGAAAAATGAGCAGGAGCATAAGGC
TCGAATTGAAATGCTAGCTTTTCAGATTGCAGAAATTGAAGCAGTCTCTCTAAAATCAGGAGAAGATTTGGCATTGATGA
AGGAGCGAGACAAGCTTCTTAACCATAAGCAGATTGCTGATACCTTAACAAATGCCTATGTCATGCTGGATAATGAAGAT
TTTTCAAGTCTTTCAAATGTTCGTTCTGCCATGAATGACCTCCAGTCTCTTGAAGAGTATGACTCAGATTACAAAGAACT
CTCTGGAAATCTATCAGAAGCCTATTATGTTTTGGAAGATGTCACTAAGCAACTCGGTGACCTTTTGGATAATTTGGACT
TTGATGCTGGGCGTTTGCAAGAGATTGAACACCGCTTAGATACGATTAATGCAATTACTCGTAAATATGGTGGGACTGTC
GATGACGTCTTAGATTATCTGGAAAATTCAAGTAAAGAATATAATCTTTTAACTGGCAATTCCAGTTCGTCAGATGCGAT
GGAACAAGAGCTTAAGCAACTTGAAAAAGATCTGCTTGCGTCTGCAGAGACCTTACAAACGGCACGCCATCAAATTGCTA
CAGCCCTTGAAGCTGAGATTAAGAACGAGTTATGCGACCTTTACATGGATAAGGCTGATTTTAAAGTTACCTTTACTAAA
GGGAAATTTAACCGTGATGGTAATGAGCAGGTTGAGTTTTACATCTCAACCAATCCAGGTGAAGGCTTTAAACCGCTTGT
TAAGGTTGCTTCAGGAGGAGAATTATCTCGACTCATGTTAGCGATTAAGTCAGCCTTTGCCCGCAAAGAAGACAAAACAA
GTATCGTCTTCGATGAGGTTGATACTGGCGTTTCAGGTCGTGTTGCCCAAGCCATCGCTCAGAAAATTCATAAGATTGGG
AGTCATGGTCAGGTTTTGGCCATCAGTCACCTTCCACAAGTTATTGCCATTGCTGATTATCAGTTCTTTATTTCTAAGGA
AAGCGATAATGAGACGACTGTCTCTCGTGTTCGTCTCTTGACACCTGAGGAAAGGGTGCAAGAAATCGCTAAGATGTTAG
CAGGTGATAATGTGACGGAGGCTGCCTTGAGCCAAGCAAGAGCCTTGTTAAAGGTAGATGACTCTCTTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.805

100

0.451

Multiple sequence alignment