Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LBM2029_RS11020 Genome accession   NZ_CP014702
Coordinates   2435233..2437770 (-) Length   845 a.a.
NCBI ID   WP_075464840.1    Uniprot ID   -
Organism   Ralstonia solanacearum strain KACC 10722     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2430233..2442770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBM2029_RS11000 (LBM2029_11000) - 2430741..2431655 (-) 915 WP_075464832.1 peptidase -
  LBM2029_RS11005 (LBM2029_11005) - 2431739..2432575 (-) 837 WP_075464834.1 transglutaminase family protein -
  LBM2029_RS11010 (LBM2029_11010) - 2432633..2433583 (-) 951 WP_075464836.1 alpha-E domain-containing protein -
  LBM2029_RS11015 (LBM2029_11015) - 2433646..2435127 (-) 1482 WP_075464838.1 circularly permuted type 2 ATP-grasp protein -
  LBM2029_RS11020 (LBM2029_11020) comA 2435233..2437770 (-) 2538 WP_075464840.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LBM2029_RS11025 (LBM2029_11025) - 2437780..2438595 (-) 816 WP_075464842.1 TatD family hydrolase -
  LBM2029_RS11030 (LBM2029_11030) lolD 2438624..2439358 (-) 735 WP_013212919.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  LBM2029_RS11035 (LBM2029_11035) - 2439351..2440601 (-) 1251 WP_075464844.1 lipoprotein-releasing ABC transporter permease subunit -
  LBM2029_RS11040 (LBM2029_11040) - 2440674..2441753 (+) 1080 WP_075464846.1 hypothetical protein -

Sequence

Protein


Download         Length: 845 a.a.        Molecular weight: 90840.66 Da        Isoelectric Point: 10.0527

>NTDB_id=173476 LBM2029_RS11020 WP_075464840.1 2435233..2437770(-) (comA) [Ralstonia solanacearum strain KACC 10722]
MRALLIGFVAGCMVLQTQPSLVPVWQPVLLGLACLLAMAVLRRGGRLPRLVPVMAVLAAACVGFGWSDWRAQQRLSVVLA
PEWEGKAIRATGVVAELPQVTEDATRFLFHIESSDAGGAVPPRVRLSWYGKRSWNERRREAGAATDRRAGIPDLQPGQRW
QLTLRLKRPHSLMNPGGFDGEYAMLADTIRAAGYVHTGKRARNAPMGEAGAGFDLHVERWRAAVRRHILAALPDARYAPV
MVALVVGDQSGIAQADWERFRRTGISHLVSISGLHITMIAGLFAALWMALWRRSFGLARWLRTPLPLRMPAQRAGAIAAM
TAALAYCLLAGMGVPAQRTLLMLATVAVARLTDRSVPASLSLCWAAAAVALVDPWAVMSAGFWLSFGAVAVIFLAARIVA
ADARDDDRRPAWPIRAWRGLRGAARIQLAVTFGLLPLTLLLFQQVSVVSAVANALAIPVVSFVTTPLALMGAALPGPWSP
PVLAWAEASFGWLVSWLDGLAMPGWSVWVAPVAPAWAWMPALVGVLLLLVPGGCRAWAWRAQGAILLLPMLLARAPVPPP
GEFRMVAFDIGQGAATLVETAGHRLLFDTGPGHGDLADAADRVIVPYLRGHGVQAIDTLVVSHEDSDHAGGTETVMAEVP
VRTMLASWPPAHRLDEQARAHGIDTAGCVAGQRWVWDGVAFEILHPVQAPPDRAPVSSNARSCVLRIAGARYAAMLAGDI
GSAQEMALIAAEAPERLMADILLVPHHGSKTSSSGAFLDAVSPQVAIFQVGYRNRYGHPHPQVWQRYGARDIERLRTDAA
GAVVIETRGDALDVRTARSMRPRYWSSALEVAALADATEPTDAQP

Nucleotide


Download         Length: 2538 bp        

>NTDB_id=173476 LBM2029_RS11020 WP_075464840.1 2435233..2437770(-) (comA) [Ralstonia solanacearum strain KACC 10722]
ATGCGCGCCCTGCTGATCGGCTTTGTCGCGGGGTGCATGGTGCTGCAGACGCAGCCGTCGCTGGTGCCGGTGTGGCAGCC
GGTGCTGCTCGGGCTCGCTTGTCTGCTGGCGATGGCGGTGCTGCGGCGCGGGGGGCGGTTGCCGAGGCTTGTTCCCGTGA
TGGCCGTGCTGGCGGCGGCTTGCGTCGGCTTCGGCTGGAGCGATTGGCGCGCGCAGCAGCGGCTGTCCGTGGTGCTGGCG
CCCGAATGGGAGGGCAAGGCCATCCGCGCGACGGGCGTTGTGGCCGAGCTGCCCCAGGTCACCGAGGACGCCACGCGTTT
CCTGTTTCACATCGAATCCAGCGACGCGGGCGGCGCCGTGCCGCCGCGCGTGCGCCTGTCGTGGTACGGCAAGCGCAGCT
GGAACGAGCGGCGGCGGGAGGCCGGGGCGGCCACCGATCGGCGCGCCGGCATCCCCGACCTGCAGCCCGGCCAGCGCTGG
CAGCTGACGCTGCGGCTCAAGCGGCCGCACAGCCTGATGAACCCGGGCGGCTTCGACGGCGAATACGCAATGCTCGCCGA
CACGATCCGCGCCGCGGGCTACGTGCACACCGGCAAACGCGCGCGCAATGCGCCGATGGGCGAAGCCGGCGCCGGTTTCG
ATCTCCATGTCGAGCGCTGGCGTGCCGCGGTGCGGCGGCACATCCTCGCCGCATTGCCCGATGCGCGCTATGCGCCCGTG
ATGGTCGCCCTGGTGGTGGGCGACCAGAGCGGCATCGCCCAGGCAGACTGGGAGCGCTTCCGCCGCACCGGCATCAGCCA
TCTCGTCAGCATTTCCGGTCTGCACATCACGATGATCGCCGGGCTGTTCGCCGCGCTCTGGATGGCGCTGTGGCGGCGCT
CGTTCGGTCTGGCCCGCTGGCTGCGCACGCCGCTGCCGCTGCGCATGCCGGCCCAGCGCGCCGGCGCCATCGCCGCGATG
ACGGCGGCGCTCGCCTATTGCCTGCTGGCGGGGATGGGCGTGCCGGCGCAGCGCACGCTGCTGATGCTCGCGACCGTCGC
CGTGGCGCGGCTGACCGATCGCAGCGTGCCGGCCAGCCTGTCGCTGTGCTGGGCCGCAGCCGCGGTGGCGCTGGTGGATC
CGTGGGCGGTCATGTCGGCGGGATTCTGGCTGTCGTTCGGCGCGGTGGCGGTCATCTTCCTGGCCGCGCGGATCGTTGCC
GCCGATGCGCGGGACGATGACCGTCGGCCCGCCTGGCCGATACGTGCCTGGCGCGGTCTGCGCGGCGCCGCGCGCATCCA
GTTGGCCGTGACGTTCGGCCTGCTGCCGTTGACGCTGCTGCTGTTCCAGCAGGTCTCGGTGGTGTCGGCCGTGGCCAACG
CGCTCGCGATCCCGGTGGTCAGCTTTGTCACGACGCCGCTGGCGTTGATGGGCGCGGCGCTGCCCGGGCCGTGGTCGCCG
CCGGTGCTGGCGTGGGCCGAGGCCAGCTTCGGGTGGCTCGTGTCGTGGCTGGATGGGCTGGCGATGCCGGGCTGGTCCGT
GTGGGTGGCGCCCGTCGCGCCCGCCTGGGCGTGGATGCCGGCCCTCGTCGGTGTGCTGTTGCTGCTCGTGCCGGGTGGTT
GTCGCGCCTGGGCCTGGCGGGCGCAGGGCGCGATCCTGTTGCTGCCGATGCTGCTGGCGCGCGCACCGGTGCCGCCGCCG
GGCGAGTTCCGGATGGTGGCATTCGACATCGGCCAGGGCGCCGCCACGCTGGTCGAGACGGCCGGCCACCGGCTGCTGTT
CGACACCGGCCCCGGCCATGGCGACCTTGCCGATGCCGCCGACCGCGTGATCGTCCCGTATCTGCGCGGACATGGCGTAC
AGGCCATCGATACGCTGGTGGTCAGCCACGAGGACAGCGACCACGCCGGCGGCACCGAAACGGTGATGGCCGAGGTGCCG
GTGCGCACCATGCTGGCGTCCTGGCCGCCCGCCCACCGGCTGGACGAGCAGGCCCGCGCGCACGGCATCGATACCGCTGG
CTGCGTGGCCGGACAGCGTTGGGTGTGGGACGGTGTCGCCTTCGAAATCCTGCATCCGGTGCAGGCGCCCCCCGATAGGG
CGCCCGTGTCCAGCAACGCCCGCAGCTGCGTGCTGCGCATCGCCGGCGCACGCTACGCCGCCATGCTGGCCGGCGACATC
GGCAGCGCCCAGGAAATGGCGCTGATCGCCGCCGAAGCGCCGGAGCGGCTCATGGCAGACATCTTGCTTGTGCCCCACCA
CGGCAGCAAGACGAGCTCCAGCGGCGCGTTTTTGGACGCGGTCTCTCCGCAGGTGGCGATTTTCCAGGTCGGCTACCGCA
ACCGGTACGGTCATCCGCATCCGCAGGTCTGGCAGCGCTACGGCGCGCGCGACATCGAGCGGCTGCGCACCGATGCAGCC
GGGGCCGTCGTCATCGAGACGCGCGGCGATGCGCTGGATGTGCGGACGGCGCGGTCGATGCGGCCGCGCTACTGGTCCTC
GGCGCTGGAGGTCGCAGCCCTGGCAGACGCCACGGAGCCCACGGACGCGCAGCCGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(24-197)

Competence protein (Competence)

(244-530)

Beta-lactamase superfamily domain (Lactamase_B_2)

(583-743)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

89.728

100

0.899

Multiple sequence alignment