Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BSR14_RS00200 Genome accession   NZ_CP018186
Coordinates   26565..27338 (+) Length   257 a.a.
NCBI ID   WP_004181941.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 21565..32338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR14_RS00180 (BSR14_00180) mreD 22127..22651 (+) 525 WP_014633740.1 rod shape-determining protein MreD -
  BSR14_RS00185 (BSR14_00185) - 22736..24133 (+) 1398 WP_156209388.1 CHAP domain-containing protein -
  BSR14_RS00190 (BSR14_00190) - 24345..25310 (+) 966 WP_002886286.1 ribose-phosphate diphosphokinase -
  BSR14_RS00195 (BSR14_00195) - 25403..26578 (+) 1176 WP_014633755.1 pyridoxal phosphate-dependent aminotransferase -
  BSR14_RS00200 (BSR14_00200) recO 26565..27338 (+) 774 WP_004181941.1 DNA repair protein RecO Machinery gene
  BSR14_RS00205 (BSR14_00205) plsX 27550..28554 (+) 1005 WP_049527604.1 phosphate acyltransferase PlsX -
  BSR14_RS00210 (BSR14_00210) - 28554..28799 (+) 246 WP_004181960.1 phosphopantetheine-binding protein -
  BSR14_RS00215 (BSR14_00215) purC 29058..29765 (+) 708 WP_002886293.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29709.82 Da        Isoelectric Point: 5.0672

>NTDB_id=173464 BSR14_RS00200 WP_004181941.1 26565..27338(+) (recO) [Streptococcus salivarius strain ICDC1]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGSGKLSAVIQPLTIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLASLTDAAIADGVADAQLFAFLEKTLELMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYAEDERRSHLNPNVPYLLDRFQGLSFEELRSISVKDDMKRKLRHFIDDLYDNYVGIHLKSKKFI
DNLNSWGHIMNKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=173464 BSR14_RS00200 WP_004181941.1 26565..27338(+) (recO) [Streptococcus salivarius strain ICDC1]
ATGCAGAAGCTTGAGAGTAGAGGGCTTGTCCTCTTCAATCGTAATTATCGTGAGAACGATAAGCTAGTTAAGATTTTTAC
CGAGCAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTAAGTGCTGTGATTCAACCTTTAACCA
TCGCTGAATTCATGATGACTGTAAATGATGAGGGCTTATCTTTCATAGAGGATTATAGCCAAGCAGAATCCTTTAAGGAA
ATTACAAGCGATATTTTCAAGCTGTCTTATGCGACTTATTTAGCTTCTCTGACGGATGCTGCTATTGCTGACGGTGTGGC
AGATGCGCAATTATTTGCATTCTTGGAGAAGACGCTTGAATTAATGGAAGAAGGCTTGGATTATGAAATCTTGACTAATA
TCTTTGAGATTCAGGTTTTAGACCGTTTCGGTGTTCGCTTGAATTTTCACGAGTGTGTCTTTTGCCATCGTGTGGGCCTT
CCTTTTGATTTTTCGTATAAGTTCTCGGGGCTACTTTGTCCAAATCATTATGCAGAGGATGAAAGGCGTAGTCACTTAAA
TCCTAATGTACCTTATCTTTTAGATCGTTTTCAGGGGCTTTCTTTTGAGGAATTGAGAAGCATATCTGTTAAGGATGACA
TGAAACGAAAGCTACGACATTTTATTGATGACCTCTATGATAATTATGTTGGAATACATCTTAAAAGTAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.846

98.444

0.619