Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AS588_RS13895 Genome accession   NZ_CP014700
Coordinates   2911406..2911696 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain S499     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2906406..2916696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS588_RS13880 (AS588_13880) - 2906629..2907954 (-) 1326 WP_088005470.1 G5 and 3D domain-containing protein -
  AS588_RS13885 (AS588_13885) - 2908089..2908856 (-) 768 WP_004264700.1 TatD family hydrolase -
  AS588_RS13890 (AS588_13890) metG 2908932..2910923 (-) 1992 WP_015388789.1 methionine--tRNA ligase -
  AS588_RS13895 (AS588_13895) abrB 2911406..2911696 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  AS588_RS13900 (AS588_13900) rsmI 2911746..2912627 (-) 882 WP_014304192.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AS588_RS13905 (AS588_13905) - 2912602..2912901 (-) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  AS588_RS13910 (AS588_13910) - 2912888..2913631 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AS588_RS13915 (AS588_13915) yabA 2913692..2914051 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  AS588_RS13920 (AS588_13920) ricT 2914066..2914893 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  AS588_RS13925 (AS588_13925) holB 2914896..2915885 (-) 990 WP_015388790.1 DNA polymerase III subunit delta' -
  AS588_RS13930 (AS588_13930) - 2915897..2916337 (-) 441 WP_004264730.1 YaaR family protein -
  AS588_RS13935 (AS588_13935) darA 2916350..2916679 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=173446 AS588_RS13895 WP_169510469.1 2911406..2911696(+) (abrB) [Bacillus amyloliquefaciens strain S499]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=173446 AS588_RS13895 WP_169510469.1 2911406..2911696(+) (abrB) [Bacillus amyloliquefaciens strain S499]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment