Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   BSR08_RS18490 Genome accession   NZ_CP018184
Coordinates   3444123..3444353 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain KH2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3439123..3449353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR08_RS18460 (BSR08_18715) ridA 3439287..3439664 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  BSR08_RS18465 (BSR08_18720) spoVG 3439859..3440152 (+) 294 WP_003218346.1 septation regulator SpoVG -
  BSR08_RS18470 (BSR08_18730) glmU 3440345..3441715 (+) 1371 WP_014478599.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  BSR08_RS18475 (BSR08_18735) prsS 3441738..3442691 (+) 954 WP_014478600.1 ribose-phosphate diphosphokinase -
  BSR08_RS18480 (BSR08_18740) rplYB 3442776..3443390 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  BSR08_RS18485 (BSR08_18745) pth 3443497..3444063 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  BSR08_RS18490 (BSR08_18750) subA/fin 3444123..3444353 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  BSR08_RS18495 (BSR08_18755) mfd 3444423..3447956 (+) 3534 WP_014478601.1 transcription-repair coupling factor -
  BSR08_RS18500 (BSR08_18760) spoVT 3448092..3448628 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=173442 BSR08_RS18490 WP_003243417.1 3444123..3444353(+) (subA/fin) [Bacillus subtilis strain KH2]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=173442 BSR08_RS18490 WP_003243417.1 3444123..3444353(+) (subA/fin) [Bacillus subtilis strain KH2]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment