Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   BSR08_RS17820 Genome accession   NZ_CP018184
Coordinates   3324208..3325002 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain KH2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3319208..3330002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR08_RS17790 (BSR08_18035) - 3319340..3319894 (-) 555 WP_015715050.1 SdpA family antimicrobial peptide system protein -
  BSR08_RS17795 (BSR08_18040) - 3320078..3320713 (-) 636 WP_014481470.1 SdpI family protein -
  BSR08_RS17800 (BSR08_18045) - 3320713..3320997 (-) 285 WP_015715052.1 autorepressor SdpR family transcription factor -
  BSR08_RS17805 (BSR08_18050) rocR 3321224..3322609 (+) 1386 WP_003244510.1 arginine utilization regulatory protein RocR -
  BSR08_RS17810 (BSR08_18055) - 3322591..3322743 (-) 153 Protein_3519 ATP-binding protein -
  BSR08_RS22950 (BSR08_18060) - 3322771..3322903 (-) 133 Protein_3520 hypothetical protein -
  BSR08_RS17815 (BSR08_18065) htrA 3322924..3324126 (-) 1203 WP_014481472.1 serine protease HtrC Regulator
  BSR08_RS17820 (BSR08_18070) vicX 3324208..3325002 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  BSR08_RS17825 (BSR08_18075) walI 3325024..3325866 (-) 843 WP_014481473.1 WalRK two-component regulatory system regulator WalI -
  BSR08_RS17830 (BSR08_18080) walH 3325853..3327220 (-) 1368 WP_014481474.1 WalRK two-component regulatory system regulator WalH -
  BSR08_RS17835 (BSR08_18085) walK 3327210..3329045 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  BSR08_RS17840 (BSR08_18090) walR 3329053..3329760 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=173434 BSR08_RS17820 WP_003226939.1 3324208..3325002(-) (vicX) [Bacillus subtilis strain KH2]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=173434 BSR08_RS17820 WP_003226939.1 3324208..3325002(-) (vicX) [Bacillus subtilis strain KH2]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTTGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGGAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTGGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGGAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAAAC
AGTGAAGTCGTTCGGCGGACTTGATGTTGAATCATTTGGCGTTTCCCACGATGCGGCCGAGCCGATGTTTTATGTATTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCATGATGTCGGCATGCTGCAAATGGGAAGATACCCGTGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACCGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53