Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AS588_RS08130 Genome accession   NZ_CP014700
Coordinates   1806928..1807212 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain S499     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1801928..1812212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS588_RS08110 (AS588_08110) ade 1802034..1803767 (-) 1734 WP_015388297.1 adenine deaminase -
  AS588_RS08115 (AS588_08115) ktrC 1803916..1804581 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  AS588_RS08120 (AS588_08120) - 1804622..1805449 (-) 828 WP_003154555.1 gamma-glutamylcyclotransferase -
  AS588_RS08125 (AS588_08125) - 1805451..1806755 (-) 1305 WP_003154556.1 ATP-binding protein -
  AS588_RS08130 (AS588_08130) abrB 1806928..1807212 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AS588_RS08140 (AS588_08140) mreBH 1807481..1808488 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  AS588_RS19855 - 1808560..1808694 (+) 135 WP_003154559.1 protein YkpC -
  AS588_RS08145 (AS588_08145) - 1808795..1810027 (+) 1233 WP_003154560.1 aminopeptidase -
  AS588_RS08150 (AS588_08150) - 1810057..1810965 (-) 909 WP_003154561.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=173419 AS588_RS08130 WP_003154557.1 1806928..1807212(-) (abrB) [Bacillus amyloliquefaciens strain S499]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=173419 AS588_RS08130 WP_003154557.1 1806928..1807212(-) (abrB) [Bacillus amyloliquefaciens strain S499]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment