Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AS588_RS02655 Genome accession   NZ_CP014700
Coordinates   544720..545472 (+) Length   250 a.a.
NCBI ID   WP_003152643.1    Uniprot ID   A0A6A8LH02
Organism   Bacillus amyloliquefaciens strain S499     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 539720..550472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS588_RS02640 (AS588_02640) - 539943..540134 (-) 192 WP_003152639.1 hypothetical protein -
  AS588_RS02645 (AS588_02645) - 540587..543229 (+) 2643 WP_003152640.1 valine--tRNA ligase -
  AS588_RS02650 (AS588_02650) - 543288..544580 (+) 1293 WP_003152642.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  AS588_RS02655 (AS588_02655) comC 544720..545472 (+) 753 WP_003152643.1 prepilin peptidase Machinery gene
  AS588_RS02660 (AS588_02660) - 545599..546600 (+) 1002 WP_003152644.1 SPOR domain-containing protein -
  AS588_RS02665 (AS588_02665) - 546742..547311 (+) 570 WP_014305513.1 Maf family protein -
  AS588_RS02670 (AS588_02670) radC 547343..548038 (+) 696 WP_007408165.1 RadC family protein -
  AS588_RS02675 (AS588_02675) mreB 548130..549143 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  AS588_RS02680 (AS588_02680) mreC 549174..550037 (+) 864 WP_003152649.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27152.80 Da        Isoelectric Point: 9.2521

>NTDB_id=173395 AS588_RS02655 WP_003152643.1 544720..545472(+) (comC) [Bacillus amyloliquefaciens strain S499]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=173395 AS588_RS02655 WP_003152643.1 544720..545472(+) (comC) [Bacillus amyloliquefaciens strain S499]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTAGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8LH02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588

Multiple sequence alignment