Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   A0O21_RS07600 Genome accession   NZ_CP014699
Coordinates   1638513..1639448 (-) Length   311 a.a.
NCBI ID   WP_067063803.1    Uniprot ID   A0A172Q8W6
Organism   Streptococcus pantholopis strain TA 26     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1633513..1644448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0O21_RS07580 (A0O21_07580) - 1634823..1635677 (-) 855 WP_067063789.1 SDR family NAD(P)-dependent oxidoreductase -
  A0O21_RS07585 (A0O21_07585) - 1635679..1636515 (-) 837 WP_067063792.1 alpha/beta fold hydrolase -
  A0O21_RS07590 (A0O21_07590) - 1636534..1637532 (-) 999 WP_067063797.1 NADP-dependent oxidoreductase -
  A0O21_RS07595 (A0O21_07595) - 1637623..1638048 (-) 426 WP_067063800.1 Rrf2 family transcriptional regulator -
  A0O21_RS07600 (A0O21_07600) amiF 1638513..1639448 (-) 936 WP_067063803.1 ABC transporter ATP-binding protein Regulator
  A0O21_RS07605 (A0O21_07605) oppD 1639441..1640493 (-) 1053 WP_067063807.1 ABC transporter ATP-binding protein Regulator
  A0O21_RS07610 (A0O21_07610) - 1640504..1641535 (-) 1032 WP_067063810.1 ABC transporter permease -
  A0O21_RS07615 (A0O21_07615) - 1641546..1642460 (-) 915 WP_067065228.1 ABC transporter permease -
  A0O21_RS07620 (A0O21_07620) - 1642576..1644225 (-) 1650 WP_067063815.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35250.35 Da        Isoelectric Point: 8.3591

>NTDB_id=173367 A0O21_RS07600 WP_067063803.1 1638513..1639448(-) (amiF) [Streptococcus pantholopis strain TA 26]
MTENRKKLVEVKNISLTFNKGKKNEVKAIDNVSFDIYEGEVLGLVGESGSGKTTVGRAILKLYDIDKGEIVFNQQTISHL
KGKQLHDFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLSKSKEERQQRVQELLALVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLLQQLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKILEIGTADA
VYNNPIHPYTKSLLTAIPEPDPEFERRRVPYVYDPKQELDGQERTMHEITPGHFVLSTADEAKAYRKTAKN

Nucleotide


Download         Length: 936 bp        

>NTDB_id=173367 A0O21_RS07600 WP_067063803.1 1638513..1639448(-) (amiF) [Streptococcus pantholopis strain TA 26]
ATGACTGAGAATCGTAAAAAGCTTGTTGAAGTCAAAAATATATCTTTAACCTTCAATAAAGGCAAAAAAAACGAAGTGAA
GGCTATTGACAATGTCAGCTTTGATATTTATGAGGGGGAAGTTTTAGGGCTGGTCGGAGAATCCGGATCCGGAAAAACAA
CCGTCGGACGGGCTATTCTCAAGCTTTATGACATCGACAAAGGTGAAATTGTCTTTAATCAGCAAACCATATCGCATTTA
AAGGGAAAACAGCTCCATGATTTTCGTAAGGATGCCCAAATGATTTTTCAGGATCCTCAGGCCAGTCTTAACGGCCGAAT
GAAGATTCGTGATATTGTGGCTGAAGGGCTGGATATTCATAAACTGTCTAAAAGTAAAGAAGAACGCCAGCAGAGAGTTC
AGGAACTACTGGCGCTTGTAGGACTTAATAAAGATCATCTGACCCGCTATCCGCATGAGTTTTCAGGCGGTCAGCGTCAG
CGGATCGGGATTGCACGGGCTCTGGCTGTTGAGCCAAAATTCATCATCGCCGATGAGCCGATTTCAGCACTTGATGTTTC
GATTCAGGCACAAGTTGTCAACTTACTGCAGCAATTGCAGCATGAACAAGGCCTGACCTATCTTTTTATCGCCCATGATT
TGTCAATGGTGAAATATATTTCTGACCGTATCGGTGTTATGCATTGGGGAAAAATCTTAGAAATAGGGACTGCTGATGCA
GTTTATAACAACCCTATTCACCCTTATACGAAAAGTCTTTTGACGGCTATTCCTGAACCTGATCCGGAATTCGAACGCCG
ACGTGTACCTTACGTTTACGATCCTAAGCAGGAATTAGACGGTCAGGAGCGGACAATGCATGAAATCACCCCCGGACATT
TTGTGCTGTCAACAGCTGATGAAGCAAAAGCTTATCGGAAAACTGCAAAAAATTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172Q8W6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

55.556

98.392

0.547
  amiF Streptococcus thermophilus LMG 18311

54.934

97.749

0.537
  amiF Streptococcus salivarius strain HSISS4

54.605

97.749

0.534

Multiple sequence alignment