Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   A0O21_RS06395 Genome accession   NZ_CP014699
Coordinates   1386484..1388277 (-) Length   597 a.a.
NCBI ID   WP_067063100.1    Uniprot ID   -
Organism   Streptococcus pantholopis strain TA 26     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1381484..1393277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0O21_RS06385 (A0O21_06385) prsA 1384596..1385588 (-) 993 WP_067063091.1 peptidylprolyl isomerase PrsA -
  A0O21_RS06390 (A0O21_06390) - 1385730..1386446 (-) 717 WP_067063096.1 O-methyltransferase -
  A0O21_RS06395 (A0O21_06395) pepF 1386484..1388277 (-) 1794 WP_067063100.1 oligoendopeptidase F Regulator
  A0O21_RS06400 (A0O21_06400) coiA 1388928..1389881 (-) 954 WP_067063105.1 competence protein CoiA Machinery gene
  A0O21_RS06405 (A0O21_06405) nagB 1390013..1390714 (-) 702 WP_067063108.1 glucosamine-6-phosphate deaminase -
  A0O21_RS06410 (A0O21_06410) - 1390802..1391299 (-) 498 WP_067063112.1 VIT1/CCC1 transporter family protein -
  A0O21_RS06415 (A0O21_06415) queA 1391451..1392479 (+) 1029 WP_067063117.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  A0O21_RS06420 (A0O21_06420) - 1392766..1393239 (-) 474 WP_158511699.1 DUF4230 domain-containing protein -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 68368.25 Da        Isoelectric Point: 4.7643

>NTDB_id=173356 A0O21_RS06395 WP_067063100.1 1386484..1388277(-) (pepF) [Streptococcus pantholopis strain TA 26]
MSDNRSHIAKEYQWDLTTVFPTDGAWEKEVEELAAEIAAAGKYAGQLLESGQKLLEITEAQLALSRRVEKVYVYASMKND
QDTTVAKYQEFQAKATALYAQFSEAFAFYEPELLTLPQDDFAAFMAETPALSAYSHFFDNLFRRQPHVLSQAEEELLAGA
QEIFGAAGETFEILDNADIVLPFVTNSDGQEVQLTHGNFISLMESKDRSVRKQAYEAMYAVYEQYQHTYAKTLQTAVKSH
NYQARVRRYSSARQAALSADFIPESVYEILIKVVNNHLPLLRRYVRLRQTILGLDDLKMYDLYTPLSQTDRSFSYPAARD
KAAQVLAVFGKEYSEHVHRAFNQGWIDVYENKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTEALLQEATSDSERFAVLNHYLDGFKGTVFRQTQFAEFEQLIHEADQNGEVLTSDY
LSSLYAELNEKYYGLSKEDNRLIRYEWARIPHFYYNYYVYQYATGFAAANYLADKIMHGRAEDKANYLTFLKAGNSEDAL
NVIRKAGLDMTDEAYLNTAFAVFEKRLEELEKLVRNS

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=173356 A0O21_RS06395 WP_067063100.1 1386484..1388277(-) (pepF) [Streptococcus pantholopis strain TA 26]
ATGTCAGATAATCGCAGTCATATAGCTAAAGAGTATCAGTGGGATTTAACGACTGTTTTTCCGACTGACGGTGCTTGGGA
AAAAGAAGTAGAGGAGCTGGCGGCTGAAATTGCGGCAGCTGGTAAGTATGCCGGTCAGCTGCTGGAATCCGGTCAAAAAC
TTCTTGAAATTACAGAAGCGCAGTTGGCTCTATCCCGACGTGTGGAAAAGGTCTATGTTTACGCCTCAATGAAAAATGAT
CAGGATACGACGGTGGCGAAATATCAAGAGTTTCAGGCTAAAGCGACAGCACTTTATGCACAGTTCAGTGAGGCTTTTGC
CTTTTATGAACCGGAATTGCTGACTTTGCCGCAGGATGATTTTGCTGCTTTTATGGCTGAAACACCAGCTCTGTCGGCTT
ACAGTCATTTTTTCGACAATCTTTTCCGCAGGCAGCCTCATGTTTTATCGCAGGCTGAAGAAGAACTTCTGGCCGGTGCT
CAGGAGATTTTTGGTGCTGCCGGTGAGACCTTTGAAATTCTTGACAATGCGGACATCGTTTTACCTTTTGTTACCAACAG
TGACGGCCAGGAAGTACAGCTGACTCATGGGAATTTTATCAGCCTGATGGAGTCAAAAGACCGTTCTGTCCGCAAACAAG
CTTATGAAGCCATGTACGCTGTCTATGAACAGTATCAGCATACTTATGCCAAAACGTTGCAGACAGCGGTTAAGAGTCAT
AATTATCAGGCGCGGGTTCGCCGGTACAGCAGTGCGCGCCAAGCAGCTCTGTCAGCCGACTTTATCCCTGAAAGTGTTTA
TGAGATTTTGATTAAGGTTGTTAATAACCATCTGCCTCTGCTTCGTCGCTATGTGAGGCTGCGGCAGACCATCCTCGGAC
TTGATGACCTGAAAATGTATGACCTTTATACGCCCCTGTCACAGACAGACCGGTCTTTCAGCTATCCGGCTGCACGCGAT
AAAGCAGCACAAGTCCTTGCTGTTTTTGGCAAAGAGTATTCGGAACATGTTCACCGGGCTTTTAACCAAGGTTGGATTGA
TGTTTATGAAAATAAGGGGAAACGTTCCGGTGCTTACTCAGGTGGTTCTTATGATACCAATGCCTTTATGCTGCTTAACT
GGCAGGACACCTTAGATAATCTGTTCACTTTGGTGCATGAAACCGGCCACAGCATGCATTCAACATTCACTAGAGAAAAT
CAGCCATATGTTTACGGCGATTATAGTATCTTTCTGGCAGAAATCGCTTCTACAACTAACGAAAATATTCTGACTGAAGC
TCTTCTGCAGGAAGCGACTTCGGACAGCGAGCGCTTTGCCGTTCTTAATCATTACTTAGATGGTTTTAAAGGAACCGTGT
TCCGCCAGACTCAGTTTGCTGAATTTGAACAGCTGATTCATGAGGCCGATCAAAACGGCGAGGTCCTAACCAGCGACTAT
CTTAGCAGCCTTTATGCAGAACTGAATGAGAAATACTACGGTTTGTCAAAAGAGGATAATCGTCTGATTCGCTATGAATG
GGCACGGATTCCGCATTTTTATTATAATTATTATGTTTACCAATATGCGACAGGTTTTGCAGCGGCTAATTACTTAGCGG
ATAAAATAATGCATGGACGGGCGGAAGATAAGGCTAATTATCTGACTTTTCTAAAGGCTGGGAATTCGGAGGATGCGCTC
AATGTTATTCGAAAAGCCGGACTGGATATGACTGATGAAGCTTATCTTAACACTGCCTTTGCTGTCTTTGAAAAACGTTT
GGAAGAATTGGAAAAGTTAGTTAGAAACAGCTGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(112-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

65.657

99.497

0.653

Multiple sequence alignment