Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   A0O21_RS06015 Genome accession   NZ_CP014699
Coordinates   1300932..1301792 (-) Length   286 a.a.
NCBI ID   WP_099092218.1    Uniprot ID   -
Organism   Streptococcus pantholopis strain TA 26     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1295932..1306792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0O21_RS06000 (A0O21_06000) pheT 1296438..1298843 (-) 2406 WP_067062821.1 phenylalanine--tRNA ligase subunit beta -
  A0O21_RS10740 (A0O21_06005) - 1298862..1299377 (-) 516 WP_067065179.1 GNAT family N-acetyltransferase -
  A0O21_RS06010 (A0O21_06010) pheS 1299560..1300603 (-) 1044 WP_067062826.1 phenylalanine--tRNA ligase subunit alpha -
  A0O21_RS06015 (A0O21_06015) endA 1300932..1301792 (-) 861 WP_099092218.1 DNA/RNA non-specific endonuclease Machinery gene
  A0O21_RS06020 (A0O21_06020) - 1301946..1302134 (-) 189 WP_067062834.1 DNA-directed RNA polymerase subunit beta -
  A0O21_RS06025 (A0O21_06025) murA 1302140..1303408 (-) 1269 WP_067062838.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  A0O21_RS06030 (A0O21_06030) - 1303472..1303708 (-) 237 WP_067062842.1 DUF1146 family protein -
  A0O21_RS06035 (A0O21_06035) - 1303994..1304410 (-) 417 WP_067062845.1 F0F1 ATP synthase subunit epsilon -
  A0O21_RS06040 (A0O21_06040) atpD 1304423..1305829 (-) 1407 WP_067062849.1 F0F1 ATP synthase subunit beta -
  A0O21_RS11085 - 1306055..1306177 (+) 123 WP_257722074.1 hypothetical protein -
  A0O21_RS11090 - 1306167..1306292 (+) 126 WP_257722075.1 hypothetical protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31110.65 Da        Isoelectric Point: 9.4792

>NTDB_id=173354 A0O21_RS06015 WP_099092218.1 1300932..1301792(-) (endA) [Streptococcus pantholopis strain TA 26]
MKNKRREKSILSLLLFLLLLGGSLLAGGTPLSNNPFFKELTDFIAEPSSAPSSNGSDLQAKRPDQSLAETVLTENVKKQL
GSSIQWNGAGAYIINNNQTDLNARVSSAPYANNKTKTVQGEKVPTVANALLTKSTRQYKSRQETGNRTNSWTPPGWHQIQ
NLSGPYDHAVDRGHLLAYSLVGGLRGYDASTSNPDNIATQLAWANQASSADATGQNYYESLVRKALDSHKRVRYRVTLIY
DGDNILASGTQLEAKSADGSLEFNVFVPNVQSGLTVNYYSGEILVN

Nucleotide


Download         Length: 861 bp        

>NTDB_id=173354 A0O21_RS06015 WP_099092218.1 1300932..1301792(-) (endA) [Streptococcus pantholopis strain TA 26]
TTGAAGAATAAGAGAAGAGAAAAGTCTATCCTTTCTCTCCTACTTTTTCTGCTTCTTTTAGGCGGAAGCCTGTTAGCGGG
CGGAACACCACTTTCCAATAATCCGTTTTTTAAGGAGCTGACTGATTTTATTGCTGAACCGTCTTCAGCTCCTTCTTCCA
ACGGTTCAGATCTACAGGCTAAAAGACCGGATCAGTCTTTAGCAGAAACGGTCTTAACAGAAAATGTCAAAAAGCAGCTC
GGCTCTTCCATCCAATGGAATGGCGCAGGCGCCTATATTATCAATAATAACCAGACCGATTTAAATGCCAGGGTTTCCAG
CGCCCCTTATGCCAATAATAAAACAAAGACCGTTCAGGGGGAAAAGGTTCCGACAGTTGCCAATGCTCTTTTGACAAAAT
CAACCAGACAGTATAAAAGCCGGCAGGAGACTGGCAATCGCACAAATTCTTGGACACCTCCGGGCTGGCATCAAATTCAA
AATTTATCTGGTCCTTACGATCACGCTGTCGACCGGGGGCATTTGCTGGCTTATTCTCTGGTGGGAGGGCTTCGGGGCTA
TGATGCTTCAACAAGCAATCCAGATAATATTGCCACACAGCTTGCTTGGGCTAATCAGGCTTCTTCAGCAGACGCAACCG
GGCAAAACTATTATGAAAGTCTTGTCAGAAAAGCTCTGGACAGTCATAAACGTGTCCGTTACCGAGTGACTTTAATTTAC
GATGGAGACAATATTTTGGCCAGTGGAACACAGCTTGAAGCCAAATCAGCGGACGGCAGTTTAGAATTTAATGTTTTTGT
CCCTAATGTCCAAAGCGGTCTGACTGTCAATTATTATTCGGGTGAAATCCTAGTGAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(96-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

62.651

87.063

0.545
  endA Streptococcus pneumoniae D39

62.651

87.063

0.545
  endA Streptococcus pneumoniae R6

62.651

87.063

0.545
  endA Streptococcus pneumoniae TIGR4

62.651

87.063

0.545

Multiple sequence alignment