Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   A0O21_RS05570 Genome accession   NZ_CP014699
Coordinates   1189658..1190119 (+) Length   153 a.a.
NCBI ID   WP_067062563.1    Uniprot ID   -
Organism   Streptococcus pantholopis strain TA 26     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1184658..1195119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0O21_RS05555 (A0O21_05560) lepA 1186576..1188402 (-) 1827 WP_067062547.1 translation elongation factor 4 -
  A0O21_RS05560 (A0O21_05565) - 1188594..1188929 (-) 336 WP_067062551.1 hypothetical protein -
  A0O21_RS05565 (A0O21_05570) - 1189104..1189349 (-) 246 WP_082854420.1 helix-turn-helix domain-containing protein -
  A0O21_RS05570 (A0O21_05575) irvR 1189658..1190119 (+) 462 WP_067062563.1 helix-turn-helix domain-containing protein Regulator
  A0O21_RS05575 (A0O21_05580) ndk 1190459..1190878 (-) 420 WP_067062565.1 nucleoside-diphosphate kinase -
  A0O21_RS10880 - 1191667..1191837 (-) 171 WP_158511695.1 hypothetical protein -
  A0O21_RS05580 (A0O21_05585) - 1192110..1192491 (-) 382 Protein_1111 pyridoxamine 5'-phosphate oxidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17095.04 Da        Isoelectric Point: 5.3024

>NTDB_id=173353 A0O21_RS05570 WP_067062563.1 1189658..1190119(+) (irvR) [Streptococcus pantholopis strain TA 26]
MGRGKLTPQDLVAMKIVSANLQRLLKESGVKQADLATTLDIPKSSLNEYVKGRSLPKSGNVQKLADYFGLKKSEIDPRFS
HYNYTASAMLENINKAASQLSEQRQEIVLDFAHQQIKEQQKTAESDSDTDGADNDGNYQKVVQNYLNEEAKED

Nucleotide


Download         Length: 462 bp        

>NTDB_id=173353 A0O21_RS05570 WP_067062563.1 1189658..1190119(+) (irvR) [Streptococcus pantholopis strain TA 26]
ATGGGACGCGGTAAATTAACCCCACAAGATTTAGTGGCCATGAAAATTGTATCCGCTAATTTACAAAGACTTTTAAAAGA
AAGCGGCGTAAAGCAGGCGGACTTAGCAACAACACTCGATATTCCCAAAAGCAGTTTGAACGAGTATGTTAAAGGCAGAA
GTCTGCCGAAATCCGGTAATGTGCAAAAGCTGGCCGATTACTTCGGTCTGAAAAAATCAGAAATCGATCCACGATTTTCA
CATTACAATTATACTGCTTCAGCTATGCTTGAAAATATCAACAAAGCTGCCAGTCAGCTGAGTGAACAAAGGCAGGAAAT
TGTGCTTGATTTTGCTCACCAGCAAATAAAAGAGCAGCAGAAAACGGCTGAATCAGATTCTGATACTGATGGTGCTGACA
ATGATGGTAATTATCAAAAGGTTGTTCAGAACTATCTGAACGAGGAAGCTAAAGAGGACTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(21-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

60.256

100

0.614

Multiple sequence alignment