Detailed information    

insolico Bioinformatically predicted

Overview


Name   rok   Type   Regulator
Locus tag   BSR08_RS04120 Genome accession   NZ_CP018184
Coordinates   761845..762420 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   O34857
Organism   Bacillus subtilis strain KH2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context


Location: 756845..767420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR08_RS04090 (BSR08_04150) dapD 757033..757743 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  BSR08_RS04095 (BSR08_04155) dapI 757813..758937 (+) 1125 WP_014476668.1 N-acetyldiaminopimelate deacetylase -
  BSR08_RS04100 (BSR08_04160) ykuS 758999..759244 (+) 246 WP_003232382.1 YkuS family protein -
  BSR08_RS04105 (BSR08_04165) mscT 759281..760084 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  BSR08_RS04110 (BSR08_04170) ahpA 760321..760863 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  BSR08_RS04115 (BSR08_04175) ykuV 760933..761379 (+) 447 WP_014479665.1 thiol-disulfide oxidoreductase YkuV -
  BSR08_RS04120 (BSR08_04180) rok 761845..762420 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  BSR08_RS04135 (BSR08_04195) cse15 763751..764716 (-) 966 WP_014479669.1 spore protein Cse15 -
  BSR08_RS04140 (BSR08_04200) mobA 764853..765452 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  BSR08_RS04145 (BSR08_04205) moeB 765503..766522 (+) 1020 WP_014479671.1 molybdopterin-synthase adenylyltransferase MoeB -

Sequence


Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=173346 BSR08_RS04120 WP_003232378.1 761845..762420(+) (rok) [Bacillus subtilis strain KH2]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=173346 BSR08_RS04120 WP_003232378.1 761845..762420(+) (rok) [Bacillus subtilis strain KH2]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 5ZUX
  PDB 5ZUZ

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1


Multiple sequence alignment