Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A0O21_RS00370 Genome accession   NZ_CP014699
Coordinates   70558..71919 (+) Length   453 a.a.
NCBI ID   WP_173644639.1    Uniprot ID   -
Organism   Streptococcus pantholopis strain TA 26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 65558..76919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0O21_RS00340 (A0O21_00350) - 65686..66474 (+) 789 WP_067059928.1 ABC transporter permease subunit -
  A0O21_RS00345 (A0O21_00355) - 66584..67378 (-) 795 WP_067059930.1 formate/nitrite transporter family protein -
  A0O21_RS00350 (A0O21_00360) - 67625..68857 (-) 1233 WP_067059932.1 NAD(P)H-dependent oxidoreductase -
  A0O21_RS00355 (A0O21_00365) - 68873..69478 (-) 606 WP_067059934.1 NADPH-dependent FMN reductase -
  A0O21_RS00360 (A0O21_00370) - 69583..69942 (+) 360 WP_067059936.1 YbaN family protein -
  A0O21_RS00365 (A0O21_00375) - 69986..70432 (+) 447 WP_067059938.1 dUTP diphosphatase -
  A0O21_RS00370 (A0O21_00380) radA 70558..71919 (+) 1362 WP_173644639.1 DNA repair protein RadA Machinery gene
  A0O21_RS00375 (A0O21_00385) - 72109..72606 (+) 498 WP_067064982.1 beta-class carbonic anhydrase -
  A0O21_RS00380 (A0O21_00390) - 72722..73474 (+) 753 WP_067059942.1 TIGR00266 family protein -
  A0O21_RS00385 (A0O21_00395) - 73767..74159 (-) 393 WP_067059943.1 Lrp/AsnC family transcriptional regulator -
  A0O21_RS00390 (A0O21_00400) - 74313..74885 (+) 573 WP_067059945.1 cysteine hydrolase family protein -
  A0O21_RS00395 (A0O21_00405) gltX 74978..76444 (+) 1467 WP_067059947.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49456.07 Da        Isoelectric Point: 7.3028

>NTDB_id=173333 A0O21_RS00370 WP_173644639.1 70558..71919(+) (radA) [Streptococcus pantholopis strain TA 26]
MAKKRTTFVCQECGYNSPKYLGRCPNCSAWSSFVEEVETAEVKNARVSLTGEKTKPVKLTDIAAIKVNRIQTGLGEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLAHKGTVLYVSGEESAEQIKLRSERLGDIDNAFYLYAETNMQLIRTEIE
KLQPDFLIIDSIQTIMSPEISSVQGSVSQVREVTAELMQLAKTNNMAVFIVGHVTKEGTIAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMRASGLAEILNPSQVFLEERLDGATGSAIVVTIEGSRPILAELQALVTPSVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVALASSYKEEPTDPKTAFIGEIGLTGEIR
RVNRIEQRIKEAAKLGFTKVYVPKNSLQGVEIPETIQVIAVRTVSEVLKKVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=173333 A0O21_RS00370 WP_173644639.1 70558..71919(+) (radA) [Streptococcus pantholopis strain TA 26]
ATCGCTAAAAAAAGAACGACCTTTGTCTGTCAAGAATGCGGCTACAATTCTCCCAAATATCTGGGGCGCTGTCCCAACTG
TTCGGCTTGGTCCTCTTTTGTAGAGGAGGTTGAGACTGCTGAAGTCAAAAATGCGCGTGTCAGCTTGACAGGCGAGAAAA
CAAAACCGGTTAAGCTGACCGATATTGCTGCGATTAAGGTCAACCGTATCCAGACTGGGCTGGGAGAATTCAACCGTGTC
TTGGGCGGAGGTGTTGTACCCGGAAGCCTGGTTCTTATCGGAGGGGATCCCGGTATCGGCAAATCGACCTTGCTTTTGCA
GGTTTCAACCCAACTGGCTCATAAAGGAACTGTTCTCTACGTTTCAGGGGAAGAGTCAGCCGAGCAGATAAAGTTGCGGA
GTGAACGTTTGGGAGATATTGACAATGCCTTTTACCTTTATGCCGAAACCAACATGCAGCTGATTCGGACGGAAATTGAA
AAACTTCAGCCGGATTTCTTGATCATTGACTCTATTCAAACCATTATGAGTCCTGAAATTTCAAGTGTCCAAGGATCTGT
CAGTCAAGTGCGGGAAGTAACAGCTGAGCTCATGCAGCTGGCTAAAACGAATAACATGGCAGTTTTTATTGTCGGTCATG
TAACCAAGGAAGGAACCATAGCCGGCCCGCGTATGCTGGAACATATGGTTGACACTGTCTTGTATTTTGAAGGGGAACGT
CATCATACTTTTCGTATCCTGCGGGCGGTTAAAAACCGTTTTGGCTCAACCAATGAAATCGGTATTTTTGAAATGCGGGC
TTCTGGTCTGGCAGAAATTCTCAATCCCAGTCAGGTCTTTTTAGAAGAACGTTTGGATGGGGCTACCGGTTCTGCTATTG
TGGTGACTATAGAAGGAAGCCGGCCTATCCTTGCAGAGCTGCAGGCCTTGGTTACACCCAGTGTTTTCGGCAATGCTAAG
CGGACAACGACTGGCCTTGACTTCAACCGTGTCAGTCTGATTATGGCAGTTTTAGAGAAACGCTGCGGCCTCCTGCTCCA
AAATCAGGATGCCTACCTAAAATCAGCCGGAGGTGTAAGATTAGATGAACCAGCCATTGATTTAGCCGTAGCGGTAGCGT
TGGCTTCAAGCTATAAGGAAGAGCCGACAGATCCCAAAACCGCTTTTATTGGCGAGATTGGTCTGACCGGTGAAATCCGC
CGGGTTAACCGTATTGAACAGCGGATAAAAGAGGCCGCCAAGCTCGGCTTCACCAAAGTCTATGTGCCTAAGAACTCTCT
GCAGGGTGTCGAAATACCTGAGACTATTCAGGTCATCGCTGTCAGAACAGTCAGTGAAGTTCTTAAAAAAGTGTTTGGCT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-218)

Subunit ChlI of Mg-chelatase (ChlI)

(362-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

84.735

99.779

0.845
  radA Streptococcus pneumoniae Rx1

84.513

99.779

0.843
  radA Streptococcus pneumoniae D39

84.513

99.779

0.843
  radA Streptococcus pneumoniae R6

84.513

99.779

0.843
  radA Streptococcus pneumoniae TIGR4

84.513

99.779

0.843
  radA Streptococcus mitis SK321

84.513

99.779

0.843
  radA Bacillus subtilis subsp. subtilis str. 168

61.05

100

0.616

Multiple sequence alignment