Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AVR78_RS02055 Genome accession   NZ_CP014696
Coordinates   410679..411275 (+) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain ATCC 700603 isolate K6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 405679..416275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVR78_RS02030 (AVR78_13710) - 405778..407535 (-) 1758 WP_004201429.1 AAA family ATPase -
  AVR78_RS02035 (AVR78_13715) matP 407721..408173 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AVR78_RS02040 (AVR78_13720) ompA 408398..409468 (-) 1071 WP_004201430.1 porin OmpA -
  AVR78_RS02045 (AVR78_13725) sulA 409821..410330 (-) 510 WP_004201431.1 SOS-induced cell division inhibitor SulA -
  AVR78_RS29370 - 410356..410661 (+) 306 WP_153650437.1 hypothetical protein -
  AVR78_RS02055 (AVR78_13730) sxy/tfoX 410679..411275 (+) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  AVR78_RS02060 (AVR78_13735) yccS 411286..413421 (-) 2136 WP_004201435.1 YccS family putative transporter -
  AVR78_RS02065 (AVR78_13740) - 413439..413885 (-) 447 WP_004201437.1 YccF domain-containing protein -
  AVR78_RS02070 (AVR78_13745) helD 414010..416064 (+) 2055 WP_004201438.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=173309 AVR78_RS02055 WP_004201433.1 410679..411275(+) (sxy/tfoX) [Klebsiella quasipneumoniae strain ATCC 700603 isolate K6]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=173309 AVR78_RS02055 WP_004201433.1 410679..411275(+) (sxy/tfoX) [Klebsiella quasipneumoniae strain ATCC 700603 isolate K6]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCATTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCCGATGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5

Multiple sequence alignment