Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BSF20_RS16270 Genome accession   NZ_CP018152
Coordinates   3140927..3142063 (-) Length   378 a.a.
NCBI ID   WP_003153656.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3135927..3147063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS16235 (BSF20_15910) - 3136259..3136855 (+) 597 WP_044053350.1 SMI1/KNR4 family protein -
  BSF20_RS20600 - 3136951..3137211 (+) 261 WP_231135847.1 GNAT family N-acetyltransferase -
  BSF20_RS20605 - 3137247..3137405 (+) 159 WP_014305243.1 GNAT family N-acetyltransferase -
  BSF20_RS16245 (BSF20_15920) - 3137625..3137963 (+) 339 WP_014305242.1 hypothetical protein -
  BSF20_RS20190 - 3138225..3138308 (-) 84 Protein_3141 putative holin-like toxin -
  BSF20_RS16250 (BSF20_15925) - 3138530..3138997 (+) 468 WP_044053349.1 DUF4879 domain-containing protein -
  BSF20_RS16255 (BSF20_15930) - 3139003..3139362 (+) 360 WP_014305240.1 hypothetical protein -
  BSF20_RS16260 (BSF20_15935) - 3139423..3140442 (-) 1020 WP_044053348.1 hypothetical protein -
  BSF20_RS16265 (BSF20_15940) - 3140755..3140937 (-) 183 WP_003153655.1 hypothetical protein -
  BSF20_RS16270 (BSF20_15945) rapC 3140927..3142063 (-) 1137 WP_003153656.1 Rap family tetratricopeptide repeat protein Regulator
  BSF20_RS16275 (BSF20_15950) - 3142425..3142877 (+) 453 WP_025852486.1 hypothetical protein -
  BSF20_RS16280 (BSF20_15955) - 3143137..3143511 (-) 375 WP_032858634.1 YoqO family protein -
  BSF20_RS20715 - 3144086..3144214 (+) 129 WP_024085501.1 hypothetical protein -
  BSF20_RS16285 (BSF20_15960) - 3144726..3145190 (-) 465 WP_025852481.1 hypothetical protein -
  BSF20_RS20770 (BSF20_15965) - 3145460..3145769 (-) 310 Protein_3151 ATP-dependent DNA ligase -
  BSF20_RS16295 (BSF20_15970) - 3146014..3146535 (-) 522 WP_024085499.1 hypothetical protein -
  BSF20_RS16300 (BSF20_15975) - 3146610..3147038 (-) 429 WP_024085498.1 hypothetical protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44598.15 Da        Isoelectric Point: 4.8529

>NTDB_id=173287 BSF20_RS16270 WP_003153656.1 3140927..3142063(-) (rapC) [Bacillus amyloliquefaciens strain LM2303]
MEQLISSSKVGLKINEWYKYIRLFSVADAEILKGEVEQEIEHMEEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPKIS
DLSEEIESKQSDLKGILEYYFNFFHGMYEFEQYEYLKAISFYNRAEKKISIVPDEIERAEFHYKVAEVYYHMKQTHMSMH
HIVQAIETYKAHETYSIRVIQCSFVIGLNYLDMEYPEKAIPHFMNALKQAQEIDMPRLIGSSLYNLGLCSFTTGHMEKAL
EYFKEGVSIYQSNSLHNSSRLLDILLMLAKTHFKLFNTVDGKQVCEQGLMLSKELNDDVLGKMFDFLMGLFVENDKERLF
KILDYLESKAMLSDVEDLATDAAMYYNVNEDHKVATAFYEKVLYARKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=173287 BSF20_RS16270 WP_003153656.1 3140927..3142063(-) (rapC) [Bacillus amyloliquefaciens strain LM2303]
TTGGAGCAATTGATCTCTTCTTCAAAGGTTGGCTTAAAAATCAATGAATGGTACAAATACATAAGATTATTCAGTGTTGC
AGATGCAGAAATTCTAAAGGGTGAAGTTGAACAAGAAATAGAGCATATGGAAGAAGATCAAGATTTATTGTTGTACTATT
CGCTCATGTGTTTTCGACATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACGACCTAAAATTTCA
GACTTATCAGAAGAGATCGAAAGTAAACAAAGCGATCTAAAAGGAATTCTTGAATATTATTTTAACTTTTTTCATGGGAT
GTATGAATTTGAACAATACGAATATCTTAAAGCAATAAGTTTTTACAACCGAGCTGAAAAGAAGATATCTATTGTCCCCG
ATGAAATAGAGCGAGCTGAATTTCACTACAAAGTTGCTGAAGTGTACTATCACATGAAGCAAACCCACATGTCTATGCAT
CATATTGTTCAAGCAATAGAAACCTACAAAGCACACGAGACATACTCAATAAGAGTAATCCAATGTTCATTCGTCATCGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAAGCAATACCGCATTTCATGAATGCATTAAAACAAGCACAAGAAATTG
ATATGCCGCGGTTAATAGGTTCTTCTTTGTACAATCTCGGTTTATGCTCATTTACAACAGGACATATGGAGAAGGCATTG
GAGTATTTTAAAGAAGGCGTCTCAATTTATCAAAGTAATTCTCTTCACAATTCTAGCCGACTGCTTGACATACTTCTAAT
GTTGGCAAAAACGCACTTTAAATTATTCAACACGGTTGATGGAAAACAGGTTTGTGAACAAGGTCTTATGCTTTCAAAGG
AGTTGAACGATGACGTATTAGGAAAAATGTTTGATTTTCTTATGGGTTTATTCGTTGAGAATGACAAAGAACGACTTTTT
AAAATCTTAGATTACTTAGAATCAAAAGCTATGCTTTCAGATGTGGAAGACCTAGCGACTGATGCAGCAATGTATTATAA
TGTAAATGAAGACCATAAAGTAGCTACAGCCTTTTATGAGAAAGTGCTTTATGCCCGAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(191-252)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

46.296

100

0.463
  rapF Bacillus subtilis subsp. subtilis str. 168

45.669

100

0.46