Detailed information NTG0173250

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BSF20_RS11960
• Genome accession: NZ_CP018152
• Coordinates: 2297715..2298845 (+)
• Length: 376 a.a.
• NCBI ID: WP_025853938.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain LM2303
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2292715..2303845

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSF20_RS11930 (BSF20_11685)	-	2292933..2293919 (-)	987	WP_003152146.1	Gfo/Idh/MocA family protein	-
BSF20_RS11935 (BSF20_11690)	-	2294099..2295259 (+)	1161	WP_044052957.1	AI-2E family transporter	-
BSF20_RS11940 (BSF20_11695)	-	2295351..2296181 (+)	831	WP_007613337.1	undecaprenyl-diphosphate phosphatase	-
BSF20_RS20570 (BSF20_11705)	-	2296559..2296822 (-)	264	WP_014305651.1	hypothetical protein	-
BSF20_RS20700	-	2296937..2297065 (-)	129	WP_255219924.1	hypothetical protein	-
BSF20_RS11955 (BSF20_11710)	-	2297192..2297395 (-)	204	WP_044052958.1	hypothetical protein	-
BSF20_RS11960 (BSF20_11715)	rapC	2297715..2298845 (+)	1131	WP_025853938.1	Rap family tetratricopeptide repeat protein	Regulator
BSF20_RS20575	-	2299158..2299342 (-)	185	Protein_2308	hypothetical protein	-
BSF20_RS11970 (BSF20_11730)	-	2300099..2300419 (+)	321	WP_044052960.1	hypothetical protein	-
BSF20_RS11975 (BSF20_11735)	-	2300472..2301113 (-)	642	WP_003152172.1	cupin domain-containing protein	-
BSF20_RS11980 (BSF20_11740)	hmpA	2301331..2302506 (+)	1176	WP_003152174.1	NO-inducible flavohemoprotein	-
BSF20_RS11985 (BSF20_11745)	-	2302649..2303494 (+)	846	WP_003152176.1	glucosaminidase domain-containing protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44382.81 Da
• Isoelectric Point: 6.5100

>NTDB_id=173250 BSF20_RS11960 WP_025853938.1 2297715..2298845(+) (rapC) [Bacillus amyloliquefaciens strain LM2303]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRPTIDE
LLEKIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLVHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYVDFKRFEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYSKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIYQGDKLFESLQKYLEALYINAIDQMGIKKT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYFYHQKMIQTQKQIQRGECLYEF

Nucleotide

• Length: 1131 bp

>NTDB_id=173250 BSF20_RS11960 WP_025853938.1 2297715..2298845(+) (rapC) [Bacillus amyloliquefaciens strain LM2303]
GTGAGTTCTGTTTTACCCTCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAAATAAATGAGATGGAAGAAGACGAGTATCTACTGATTTATTACA
CCCTCATGAAATTCCGCCATCAGCTCATGCTGGATTATTTAGAACCGGTGACTACCCGTGTGAGACCGACAATTGACGAG
CTGCTGGAAAAAATCGAAGCATCAAATAAAGGAATTTCCGGCCTGCTGTGCTATTACTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAAGCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCGTTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCTATGCATCAC
GTAAAGCAAGCACTCGATATTTACGATCAGTATGAGTTGTATAAGGTTCGGAAAATTCAATGTCTATTCGTCATCTCTGG
GAATTATGTTGACTTTAAACGCTTTGAAAAAAGTTTGCCTCATTTAGAAAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACCTAGAAGAATACAGTAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATATCTGAAAAGTATAAATTGGGTAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGCAAAAAGGGACTTTCATCAGCGATATATCAAGGGG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATATATTAATGCAATAGACCAAATGGGAATCAAAAAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAATC
AAAGCAATATGACAAATCTTATTTTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (193-252)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.591	100	0.449
rapF	Bacillus subtilis subsp. subtilis str. 168	40.106	100	0.404