Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   BSF20_RS07700 Genome accession   NZ_CP018152
Coordinates   1474674..1475363 (+) Length   229 a.a.
NCBI ID   WP_004393241.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1469674..1480363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS07680 (BSF20_07520) - 1470839..1471873 (+) 1035 WP_004393236.1 Gfo/Idh/MocA family protein -
  BSF20_RS07685 (BSF20_07525) - 1471892..1472761 (+) 870 WP_015387482.1 sugar phosphate isomerase/epimerase family protein -
  BSF20_RS07690 (BSF20_07530) iolI 1472849..1473691 (+) 843 WP_015387483.1 2-keto-myo-inositol isomerase -
  BSF20_RS07695 (BSF20_07535) fba 1473694..1474566 (+) 873 WP_060657877.1 class II fructose-1,6-bisphosphate aldolase -
  BSF20_RS07700 (BSF20_07540) braR 1474674..1475363 (+) 690 WP_004393241.1 two-component system response regulator YxdJ Regulator
  BSF20_RS07705 (BSF20_07545) yxdK 1475360..1476337 (+) 978 WP_004393249.1 two-component system sensor histidine kinase YxdK -
  BSF20_RS07710 (BSF20_07550) yxdL 1476482..1477255 (+) 774 WP_072588347.1 ABC transporter ATP-binding protein YxdL -
  BSF20_RS07715 (BSF20_07555) yxdM 1477230..1479098 (+) 1869 WP_004393253.1 ABC transporter permease YxdM -
  BSF20_RS07720 (BSF20_07560) - 1479112..1479459 (+) 348 WP_004393256.1 YxeA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26545.26 Da        Isoelectric Point: 4.8564

>NTDB_id=173225 BSF20_RS07700 WP_004393241.1 1474674..1475363(+) (braR) [Bacillus amyloliquefaciens strain LM2303]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=173225 BSF20_RS07700 WP_004393241.1 1474674..1475363(+) (braR) [Bacillus amyloliquefaciens strain LM2303]
TTGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGCGGATTTCACGGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ACCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCAGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTACGCCGCCAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
CATTTTCGTCGATGATAATACGCTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAACGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.359

97.38

0.393