Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   BSF20_RS07020 Genome accession   NZ_CP018152
Coordinates   1339949..1340800 (+) Length   283 a.a.
NCBI ID   WP_004392966.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1334949..1345800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS07000 (BSF20_06860) mnmG 1335304..1337190 (+) 1887 WP_004392959.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  BSF20_RS07005 (BSF20_06865) rsmG 1337204..1337923 (+) 720 WP_004392961.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  BSF20_RS07010 (BSF20_06870) noc 1338045..1338896 (+) 852 WP_007409900.1 nucleoid occlusion protein -
  BSF20_RS07015 (BSF20_06875) soj 1339195..1339956 (+) 762 WP_004392964.1 sporulation initiation inhibitor protein Soj -
  BSF20_RS07020 (BSF20_06880) spo0J 1339949..1340800 (+) 852 WP_004392966.1 ParB/RepB/Spo0J family partition protein Regulator
  BSF20_RS07025 (BSF20_06885) yyaC 1340830..1341444 (-) 615 WP_004392969.1 spore protease YyaC -
  BSF20_RS07030 (BSF20_06890) - 1341617..1341958 (-) 342 WP_231135877.1 GNAT family N-acetyltransferase -
  BSF20_RS07035 (BSF20_06895) - 1342262..1343287 (+) 1026 WP_117614745.1 hypothetical protein -
  BSF20_RS07040 (BSF20_06900) - 1343373..1343579 (+) 207 WP_004392973.1 DUF951 domain-containing protein -
  BSF20_RS07045 (BSF20_06905) - 1343626..1345629 (+) 2004 WP_014306209.1 molybdopterin-dependent oxidoreductase -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 32351.29 Da        Isoelectric Point: 8.3471

>NTDB_id=173219 BSF20_RS07020 WP_004392966.1 1339949..1340800(+) (spo0J) [Bacillus amyloliquefaciens strain LM2303]
MAKGGLGKGINALFNQVDLSEETVEEIKISDLRPNPYQPRKQFDDESLAELKESIIQHGILQPIIVRKSLKGYDIVAGER
RYRAAKLAGKETVPAIVRDLSESLMREIALLENLQREDLSPLEEALAYDSLLKHLDLTQEQLAKRLGKSRPHIANHLRLL
TLPESIQNLIAEGTLSMGHGRTLLGLKNKNKLEPLVKKVVEEQLNVRQLEQLIQQLNNNVPRETKKKEPVQDVVLKERES
YLQNYFGTTVNIKRQKKKGKIEIEFFSNEDLERILELLSEREA

Nucleotide


Download         Length: 852 bp        

>NTDB_id=173219 BSF20_RS07020 WP_004392966.1 1339949..1340800(+) (spo0J) [Bacillus amyloliquefaciens strain LM2303]
ATGGCTAAAGGCGGGCTCGGAAAAGGGATTAACGCGTTGTTTAATCAGGTTGATTTGTCTGAAGAGACAGTGGAAGAAAT
TAAAATCAGTGATTTACGCCCCAATCCTTATCAGCCAAGAAAACAATTTGATGATGAGTCATTAGCTGAACTGAAGGAAT
CCATCATTCAGCATGGCATTCTTCAGCCCATTATCGTGAGAAAATCATTGAAGGGCTATGATATTGTAGCCGGCGAACGC
CGTTACCGCGCCGCAAAACTTGCCGGTAAAGAGACAGTGCCGGCTATCGTGCGGGATTTATCTGAATCGCTGATGCGGGA
AATCGCTCTTTTGGAAAACCTTCAGCGTGAAGACTTATCACCGCTTGAAGAAGCTCTGGCATATGACTCACTGCTGAAGC
ATTTGGATTTAACCCAGGAACAGCTCGCTAAACGGCTCGGGAAAAGCAGGCCTCATATTGCCAACCATTTAAGACTGCTG
ACGCTGCCGGAAAGCATCCAGAACCTCATTGCAGAAGGTACGTTATCCATGGGACACGGCAGAACCTTGCTTGGCTTGAA
AAATAAAAACAAGCTTGAACCGCTTGTGAAGAAAGTGGTTGAAGAACAGCTGAACGTCCGCCAGCTTGAGCAGCTGATTC
AGCAGTTAAACAACAATGTTCCACGTGAAACAAAGAAAAAAGAACCTGTTCAAGATGTTGTGTTAAAAGAGCGGGAATCG
TATTTGCAAAATTACTTCGGAACAACAGTCAATATTAAGAGACAAAAGAAAAAAGGGAAGATTGAGATTGAGTTTTTCTC
AAATGAAGATCTTGAACGTATCCTGGAACTATTGTCCGAAAGAGAAGCGTAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(25-113)

HTH domain found in ParB protein (HTH_ParB)

(164-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.538

91.873

0.382