Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   BSF20_RS06640 Genome accession   NZ_CP018152
Coordinates   1269789..1270019 (-) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1264789..1275019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS06630 (BSF20_06495) spoVT 1265513..1266049 (-) 537 WP_004264646.1 stage V sporulation protein T -
  BSF20_RS06635 (BSF20_06500) mfd 1266186..1269719 (-) 3534 WP_014304197.1 transcription-repair coupling factor -
  BSF20_RS06640 (BSF20_06505) subA/fin 1269789..1270019 (-) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  BSF20_RS06645 (BSF20_06510) pth 1270081..1270647 (-) 567 WP_004264652.1 aminoacyl-tRNA hydrolase -
  BSF20_RS06650 (BSF20_06515) - 1270732..1271340 (-) 609 WP_004264654.1 50S ribosomal protein L25/general stress protein Ctc -
  BSF20_RS06655 (BSF20_06520) - 1271425..1272378 (-) 954 WP_004264656.1 ribose-phosphate diphosphokinase -
  BSF20_RS06660 (BSF20_06525) glmU 1272400..1273770 (-) 1371 WP_004264658.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  BSF20_RS06665 (BSF20_06530) spoVG 1273962..1274255 (-) 294 WP_004264660.1 septation regulator SpoVG -
  BSF20_RS06670 (BSF20_06535) ridA 1274451..1274831 (-) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=173214 BSF20_RS06640 WP_004264650.1 1269789..1270019(-) (subA/fin) [Bacillus amyloliquefaciens strain LM2303]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=173214 BSF20_RS06640 WP_004264650.1 1269789..1270019(-) (subA/fin) [Bacillus amyloliquefaciens strain LM2303]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCGACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAACGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868