Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   BOC72_RS03000 Genome accession   NZ_CP018138
Coordinates   536209..536475 (+) Length   88 a.a.
NCBI ID   WP_001814186.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SP64     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 531209..541475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BOC72_RS02980 (BOC72_00552) - 531473..531982 (+) 510 WP_000619939.1 GNAT family N-acetyltransferase -
  BOC72_RS02985 (BOC72_00553) pheT 532059..534464 (+) 2406 WP_000961570.1 phenylalanine--tRNA ligase subunit beta -
  BOC72_RS02990 (BOC72_00554) - 534532..535533 (-) 1002 WP_000597984.1 endonuclease/exonuclease/phosphatase family protein -
  BOC72_RS02995 - 535680..536083 (+) 404 Protein_547 helix-turn-helix domain-containing protein -
  BOC72_RS03000 HI0659 536209..536475 (+) 267 WP_001814186.1 helix-turn-helix domain-containing protein Machinery gene
  BOC72_RS03005 (BOC72_00556) metE 536736..538985 (+) 2250 WP_000108216.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  BOC72_RS03010 (BOC72_00557) metF 539049..539915 (+) 867 WP_001277841.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9641.11 Da        Isoelectric Point: 4.2720

>NTDB_id=172997 BOC72_RS03000 WP_001814186.1 536209..536475(+) (HI0659) [Streptococcus pneumoniae strain SP64]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=172997 BOC72_RS03000 WP_001814186.1 536209..536475(+) (HI0659) [Streptococcus pneumoniae strain SP64]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489