Detailed information NTG0172872

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: BOC71_RS01790
• Genome accession: NZ_CP018137
• Coordinates: 309443..311548 (+)
• Length: 701 a.a.
• NCBI ID: WP_001063386.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain SP61
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 304443..316548

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BOC71_RS01775 (BOC71_00333)	ftsL	305279..305596 (+)	318	WP_000840840.1	cell division protein FtsL	-
BOC71_RS01780 (BOC71_00334)	pbp2X	305600..307852 (+)	2253	WP_000872242.1	penicillin-binding protein PBP2X	-
BOC71_RS01785 (BOC71_00335)	mraY	307854..308834 (+)	981	WP_000470817.1	phospho-N-acetylmuramoyl-pentapeptide- transferase	-
BOC71_RS01790 (BOC71_00336)	clpC	309443..311548 (+)	2106	WP_001063386.1	AAA family ATPase	Regulator
BOC71_RS01800 (BOC71_00337)	-	311844..312326 (-)	483	WP_000032550.1	S-ribosylhomocysteine lyase	-
BOC71_RS01805 (BOC71_00338)	-	312421..313905 (-)	1485	WP_000743611.1	DUF1846 domain-containing protein	-
BOC71_RS01810 (BOC71_00339)	-	314058..315665 (+)	1608	WP_001156827.1	glycoside hydrolase family 13 protein	-
BOC71_RS01815	-	315830..315997 (+)	168	WP_033607364.1	S-ribosylhomocysteinase	-
BOC71_RS01820 (BOC71_00340)	-	315990..316511 (-)	522	Protein_335	transposase	-

Sequence

Protein

• Length: 701 a.a.
• Molecular weight: 77559.33 Da
• Isoelectric Point: 4.7080

>NTDB_id=172872 BOC71_RS01790 WP_001063386.1 309443..311548(+) (clpC) [Streptococcus pneumoniae strain SP61]
MNNNFNNFNNMDDLFNQLMGGMRGYSSENRRYLINGREVTPEEFAHYRATGQLPGNAETDVQMPQQASGMKQDGVLAKLG
RNLTAEAREGKLDPVIGRNKEIQETSEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGL
EAGTQYRGSFEENVQNLVNEVKEAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTI
LKNAALARRFNEVKVNAPSAENTFKILQGIRDLYQQHHNVILPDEVLKAAVDYSVQYIPQRSLPDKAIDLVDVTAAHLAA
QHPVTDVHAVEREIETEKDKQEKAVEAEDFEAALNYKTRIAELEKKIENHTEDMKVTASVNDVAESVERMTGIPVSQMGA
SDIERLKDMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGKTELAKQLALDMFGTQDAIIRLD
MSEYSDRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNT
VIIATSNAGFGYEANLTEDADKPELMDRLKPFFRPELLNRFNAVIEFSHLTKEDLSKIVDLMLAEVNQTLAKKDIDLVVS
QAAKDYITEEGYDEVMGVRPLRRVVEQEIRDKVTDFHLDHLDAKHLEADMEDGVLVIREKV

Nucleotide

• Length: 2106 bp

>NTDB_id=172872 BOC71_RS01790 WP_001063386.1 309443..311548(+) (clpC) [Streptococcus pneumoniae strain SP61]
ATGAATAACAACTTTAATAATTTTAATAACATGGATGATTTATTTAACCAATTGATGGGTGGTATGCGAGGATATAGTTC
TGAAAATCGCCGTTACTTAATTAATGGACGCGAAGTCACACCTGAGGAATTTGCTCACTATCGTGCGACTGGTCAATTAC
CAGGAAATGCAGAAACTGATGTGCAAATGCCACAACAGGCATCAGGTATGAAACAAGACGGTGTCCTTGCAAAACTAGGT
CGAAACTTGACAGCAGAAGCGCGTGAGGGCAAGTTGGATCCTGTTATCGGACGAAACAAGGAAATTCAAGAAACATCTGA
AATCCTCTCACGCCGCACCAAGAACAATCCTGTTTTGGTCGGAGATGCAGGTGTTGGTAAGACAGCAGTTGTCGAAGGTC
TAGCGCAAGCCATTGTGAACGGAGATGTTCCTGCTGCTATCAAGAACAAGGAAATTATTTCTATTGATATCTCAGGTCTT
GAGGCTGGTACTCAATACCGTGGTAGCTTTGAAGAAAATGTCCAAAACTTAGTCAATGAAGTGAAAGAAGCAGGGAATAT
TATCCTCTTCTTTGATGAAATTCACCAAATTCTTGGTGCTGGTAGCACTGGTGGAGACAGTGGTTCTAAAGGACTTGCGG
ATATTCTCAAGCCAGCTCTCTCTCGTGGAGAATTGACAGTGATTGGGGCAACAACTCAAGACGAATACCGTAACACCATC
TTGAAGAATGCTGCTCTTGCTCGTCGTTTCAACGAAGTGAAGGTCAATGCTCCTTCAGCAGAGAATACTTTTAAAATTCT
TCAAGGCATTCGTGACCTCTATCAACAACACCACAATGTCATCTTGCCAGACGAAGTCTTGAAAGCAGCGGTGGATTATT
CTGTTCAATACATTCCTCAACGTAGCTTGCCAGATAAGGCTATTGACCTTGTCGATGTAACGGCTGCTCACTTGGCGGCT
CAACATCCAGTAACAGATGTGCATGCTGTTGAACGAGAAATCGAAACGGAAAAAGACAAGCAAGAAAAAGCAGTTGAAGC
AGAAGATTTTGAAGCAGCTCTAAACTATAAAACACGCATTGCAGAATTGGAAAAGAAAATCGAAAACCACACAGAAGATA
TGAAAGTGACTGCAAGTGTCAACGATGTGGCTGAATCCGTGGAACGAATGACAGGTATCCCAGTATCGCAAATGGGAGCT
TCAGATATCGAACGTTTGAAAGATATGGCTCATCGCTTGCAAGACAAGGTGATTGGTCAAGATAAGGCCGTAGAAGCTGT
AGCTCGTGCTATCCGTCGTAACCGTGCTGGTTTTGATGAAGGAAATCGCCCAATCGGCAGCTTCCTCTTTGTAGGATCTA
CTGGGGTTGGTAAGACGGAGCTTGCTAAGCAATTGGCACTCGATATGTTTGGAACCCAGGATGCGATTATCCGTTTGGAT
ATGTCTGAATACAGTGACCGCACAGCTGTTTCTAAGCTAATTGGTACAACAGCAGGCTATGTGGGTTATGATGACAATAG
CAATACCTTAACAGAACGTGTTCGTCGCAATCCATACTCTATCATTCTCTTGGATGAAATTGAAAAGGCTGATCCTCAAG
TTATTACCCTTCTCCTCCAAGTTCTAGATGATGGTCGTTTGACAGATGGTCAAGGAAATACAGTAAACTTCAAGAACACT
GTCATTATTGCGACCTCAAATGCTGGATTTGGCTATGAAGCCAACTTGACAGAAGATGCGGATAAACCAGAATTGATGGA
CCGTTTGAAACCTTTCTTCCGTCCAGAACTCCTCAACCGCTTTAATGCAGTCATCGAGTTCTCACACTTGACTAAGGAAG
ACCTTTCTAAGATTGTAGATTTGATGTTGGCTGAAGTTAACCAAACCTTGGCTAAGAAAGACATTGACTTGGTAGTCAGT
CAAGCGGCTAAAGATTATATCACAGAAGAAGGTTACGACGAAGTCATGGGGGTTCGTCCTCTCCGTCGCGTGGTTGAACA
AGAAATTCGTGATAAGGTGACAGACTTCCACTTGGATCATTTAGATGCTAAACATCTGGAAGCAGATATGGAAGATGGCG
TTTTGGTTATTCGTGAGAAAGTCTAA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (259-354)

• ATPase family associated with various cellular activities (AAA) (AAA) (118-250)

• AAA domain (Cdc48 subfamily) (AAA_2) (443-603)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (610-680)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	49.922	91.441	0.456
clpE	Streptococcus mutans UA159	49.065	91.583	0.449
clpE	Streptococcus pneumoniae TIGR4	47.792	90.442	0.432
clpE	Streptococcus pneumoniae Rx1	47.792	90.442	0.432
clpE	Streptococcus pneumoniae D39	47.792	90.442	0.432
clpE	Streptococcus pneumoniae R6	47.792	90.442	0.432
clpC	Bacillus subtilis subsp. subtilis str. 168	44.737	92.154	0.412
clpC	Streptococcus pneumoniae Rx1	42.496	90.3	0.384
clpC	Streptococcus pneumoniae D39	42.496	90.3	0.384
clpC	Streptococcus pneumoniae TIGR4	42.338	90.3	0.382
clpC	Streptococcus thermophilus LMD-9	42.338	90.3	0.382
clpC	Streptococcus thermophilus LMG 18311	42.18	90.3	0.381
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.95	88.017	0.378
clpC	Streptococcus mutans UA159	41.748	88.16	0.368