Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VVCECT4999_RS11075 Genome accession   NZ_CP014636
Coordinates   2216250..2217650 (-) Length   466 a.a.
NCBI ID   WP_039447617.1    Uniprot ID   -
Organism   Vibrio vulnificus strain CECT 4999     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2211250..2222650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVCECT4999_RS11040 (VVCECT4999_10190) moaE 2211842..2212297 (-) 456 WP_011080885.1 molybdopterin synthase catalytic subunit MoaE -
  VVCECT4999_RS11045 (VVCECT4999_10195) moaD 2212299..2212544 (-) 246 WP_011080886.1 molybdopterin synthase sulfur carrier subunit -
  VVCECT4999_RS11050 (VVCECT4999_10200) moaC 2212541..2213020 (-) 480 WP_017428877.1 cyclic pyranopterin monophosphate synthase MoaC -
  VVCECT4999_RS11055 (VVCECT4999_10205) moaB 2213031..2213543 (-) 513 WP_017428876.1 molybdenum cofactor biosynthesis protein B -
  VVCECT4999_RS11060 (VVCECT4999_10210) moaA 2213622..2214611 (-) 990 WP_039447621.1 GTP 3',8-cyclase MoaA -
  VVCECT4999_RS11065 (VVCECT4999_10215) - 2214926..2215816 (+) 891 WP_017790689.1 YvcK family protein -
  VVCECT4999_RS11070 (VVCECT4999_10220) luxU 2215903..2216250 (-) 348 WP_017428873.1 quorum-sensing phosphorelay protein LuxU -
  VVCECT4999_RS11075 (VVCECT4999_10225) luxO 2216250..2217650 (-) 1401 WP_039447617.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  VVCECT4999_RS11080 (VVCECT4999_10230) uvrB 2217958..2219988 (-) 2031 WP_013572115.1 excinuclease ABC subunit UvrB -
  VVCECT4999_RS11085 (VVCECT4999_10235) - 2220083..2220271 (-) 189 WP_017428870.1 hypothetical protein -
  VVCECT4999_RS11095 (VVCECT4999_10245) rsxA 2220869..2221447 (+) 579 WP_017428869.1 electron transport complex subunit RsxA -
  VVCECT4999_RS11100 (VVCECT4999_10250) rsxB 2221449..2222045 (+) 597 WP_011080896.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52083.61 Da        Isoelectric Point: 6.2540

>NTDB_id=172866 VVCECT4999_RS11075 WP_039447617.1 2216250..2217650(-) (luxO) [Vibrio vulnificus strain CECT 4999]
MQQITTTKQRYLLMVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKASHP
DVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNDSDSAGSQNYQGFIGSSQKMQQVYRTI
DSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRER
GEDVIEIAYSLLGYMSHEEGKNFVRFSQSVIDRFNEYEWPGNVRQLQNVLRNVVVLNNGKEITMEMLPPPLNQPFERKES
AQPDLSELISVRDICPLWLTEKLAIELAIKACDGNIPRAAGYLDVSPSTIYRKLQAWNEKEEKQKA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=172866 VVCECT4999_RS11075 WP_039447617.1 2216250..2217650(-) (luxO) [Vibrio vulnificus strain CECT 4999]
ATGCAACAAATAACGACAACGAAACAGCGTTACTTGCTGATGGTAGAAGACACCGCTTCTGTCGCAGCCCTCTATCGCTC
CTATCTCATGCCATTGGGTATCGATATCAATATCGTGGGTACTGGGCGTGACGCGATAGACAGTTTAAAACATCGCATTC
CAGATCTTATTCTGCTGGACTTACGCCTACCGGACATGACGGGAATGGACGTATTGCATGCAGTGAAAGCAAGCCACCCT
GATGTTCCTATCATTTTCATGACCGCACACGGCTCGATCGATACTGCTGTTGAAGCAATGCGACACGGATCGCAAGATTT
CTTGATCAAACCCTGTGAAGCTGACCGACTCAGGGTCACGGTGAACAACGCTATCCGCAAGGCGAGCAAGCTAAAAAATG
ATTCAGACAGCGCCGGAAGTCAGAATTATCAAGGCTTTATCGGCAGTAGTCAAAAAATGCAGCAGGTCTACCGAACCATT
GACTCGGCGGCCAGTAGTAAAGCGAGTATTTTTATCACTGGTGAAAGTGGTACGGGTAAAGAGGTGTGCGCAGAAGCCAT
TCATGCAGCCAGTCGACGCGGAGACAAGCCATTTATCGCGATTAACTGTGCAGCGATCCCCAAGGATTTGATTGAAAGTG
AGCTATTTGGGCATGTCAAAGGTGCGTTTACTGGCGCAGCGACCGATCGCCAAGGGGCGGCAGAGCTCGCCGATGGAGGC
ACACTGTTCCTTGATGAGCTGTGTGAAATGGACCTAGATCTGCAAACAAAATTGCTGCGTTTTATCCAAACGGGTACTTT
CCAAAAAGTGGGCTCTTCAAAAATGAAGAGTGTTGACGTGCGCTTTGTGTGCGCGACAAACCGAGACCCTTGGAAAGAGG
TACAAGAAGGGCGCTTTCGTGAAGATTTGTACTACCGACTTTATGTGATTCCACTGCACTTGCCACCACTTCGTGAGCGT
GGAGAGGATGTCATTGAGATCGCTTACTCGTTACTGGGTTATATGTCACATGAGGAAGGGAAAAACTTTGTTCGTTTCTC
TCAATCTGTGATAGATAGATTTAATGAATATGAGTGGCCAGGCAATGTGCGTCAGTTACAAAATGTGCTGCGTAACGTGG
TGGTTCTTAACAACGGTAAAGAGATTACCATGGAGATGTTGCCGCCTCCTTTGAATCAGCCCTTTGAACGCAAAGAAAGT
GCGCAACCTGATCTGAGTGAGTTGATTTCCGTCAGAGATATTTGTCCATTGTGGTTGACCGAGAAACTGGCGATTGAACT
AGCGATTAAAGCGTGTGATGGTAACATTCCGAGAGCCGCAGGCTATCTTGATGTCAGCCCGTCGACGATTTATCGCAAGT
TACAGGCGTGGAATGAAAAAGAAGAAAAACAGAAAGCATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(147-312)

Response regulator receiver domain (Response_reg)

(13-121)

Bacterial regulatory protein, Fis family (HTH_8)

(417-457)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.099

95.708

0.824

Multiple sequence alignment