Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   VVCECT4999_RS09720 Genome accession   NZ_CP014636
Coordinates   1915978..1917399 (+) Length   473 a.a.
NCBI ID   WP_053542688.1    Uniprot ID   -
Organism   Vibrio vulnificus strain CECT 4999     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1910978..1922399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVCECT4999_RS09695 (VVCECT4999_08865) cobC 1911660..1912298 (-) 639 WP_039449435.1 alpha-ribazole phosphatase -
  VVCECT4999_RS09700 (VVCECT4999_08870) cobU 1912308..1912868 (-) 561 WP_039449438.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  VVCECT4999_RS09705 (VVCECT4999_08875) - 1912871..1913638 (-) 768 WP_017419950.1 adenosylcobinamide-GDP ribazoletransferase -
  VVCECT4999_RS09710 (VVCECT4999_08880) cobT 1913640..1914668 (-) 1029 WP_039449441.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  VVCECT4999_RS09715 (VVCECT4999_08890) - 1915206..1915904 (+) 699 WP_039449447.1 oxidoreductase -
  VVCECT4999_RS09720 (VVCECT4999_08895) sbcB 1915978..1917399 (+) 1422 WP_053542688.1 exodeoxyribonuclease I Machinery gene
  VVCECT4999_RS09725 (VVCECT4999_08900) - 1917445..1917816 (+) 372 WP_044666526.1 CidA/LrgA family protein -
  VVCECT4999_RS09730 (VVCECT4999_08905) - 1917819..1918496 (+) 678 WP_038963115.1 LrgB family protein -
  VVCECT4999_RS09735 (VVCECT4999_08910) - 1918821..1919213 (+) 393 WP_017419943.1 SulA-like leucine-rich domain-containing protein -
  VVCECT4999_RS09740 (VVCECT4999_08915) - 1919416..1920519 (+) 1104 WP_038969569.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  VVCECT4999_RS09745 (VVCECT4999_08920) - 1920615..1921004 (-) 390 WP_017419941.1 hypothetical protein -
  VVCECT4999_RS09750 (VVCECT4999_08925) - 1921244..1922011 (-) 768 WP_017419940.1 phospholipase A -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54772.02 Da        Isoelectric Point: 5.1722

>NTDB_id=172862 VVCECT4999_RS09720 WP_053542688.1 1915978..1917399(+) (sbcB) [Vibrio vulnificus strain CECT 4999]
MQQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENATN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=172862 VVCECT4999_RS09720 WP_053542688.1 1915978..1917399(+) (sbcB) [Vibrio vulnificus strain CECT 4999]
ATGCAGCAAGACAATCAGCCCACTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGCCCAGCAAAAGATCGTCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCGCTCATTACCGGAATTACGCCGCAAAAAGCGCAGAAAGAAGGCTTACCAGAGCCA
GAATTCATCGCTAAAATCCACGCAGAGTTGTCGCGCCCGAACACCACGAGCCTCGGCTACAACAGTATTCGCTTCGATGA
CGAAGTCACGCGTTACACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCGGTGGCGAATGGCATTGAACACAGTAACGCGCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGTTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGTGAATGCCAATAC
ACCAGTTGGATTGTGCCATTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTCGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACACGTCATGATGAGCTGGGTGATTTACTGCCTG
TGCCAGTTAAATTGGTGCATTTGAATAAGTGCCCGATTTTAGCACCCGCCAAAACCCTCACAGCGGAGAACGCCACCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCACCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTTGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACTCACCTTGCCGCTTTGGACATCACGTTCAACGATAAACGC
ATCGAACCGCTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.72

99.789

0.805

Multiple sequence alignment