Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   BMJ42_RS09985 Genome accession   NZ_CP018136
Coordinates   1815549..1816259 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain SP49     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1810549..1821259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMJ42_RS09970 (BMJ42_01892) - 1811090..1811338 (-) 249 WP_000364990.1 YneF family protein -
  BMJ42_RS09975 (BMJ42_01893) treC 1811594..1813219 (-) 1626 WP_000171222.1 alpha,alpha-phosphotrehalase -
  BMJ42_RS09980 (BMJ42_01894) treP 1813397..1815364 (-) 1968 WP_000514332.1 PTS system trehalose-specific EIIBC component -
  BMJ42_RS09985 (BMJ42_01895) treR 1815549..1816259 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  BMJ42_RS09990 - 1816414..1817740 (+) 1327 Protein_1874 ISL3 family transposase -
  BMJ42_RS09995 (BMJ42_01899) - 1817815..1818741 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein -
  BMJ42_RS10000 (BMJ42_01900) amiE 1818752..1819819 (-) 1068 WP_000159562.1 ABC transporter ATP-binding protein Regulator
  BMJ42_RS10005 (BMJ42_01901) amiD 1819828..1820754 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=172815 BMJ42_RS09985 WP_000760673.1 1815549..1816259(+) (treR) [Streptococcus pneumoniae strain SP49]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=172815 BMJ42_RS09985 WP_000760673.1 1815549..1816259(+) (treR) [Streptococcus pneumoniae strain SP49]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593