Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AYR52_RS04000 Genome accession   NZ_CP014623
Coordinates   884974..885846 (+) Length   290 a.a.
NCBI ID   WP_068224160.1    Uniprot ID   A0A192H3X9
Organism   Loigolactobacillus backii strain TMW 1.1988     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 879974..890846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR52_RS03980 (AYR52_03980) - 880971..881528 (-) 558 WP_068224148.1 TetR/AcrR family transcriptional regulator -
  AYR52_RS03985 (AYR52_03985) - 881670..882539 (+) 870 WP_068224151.1 SDR family oxidoreductase -
  AYR52_RS03990 (AYR52_03990) ylqF 883309..884163 (+) 855 WP_068224154.1 ribosome biogenesis GTPase YlqF -
  AYR52_RS03995 (AYR52_03995) - 884156..884914 (+) 759 WP_068224157.1 ribonuclease HII -
  AYR52_RS04000 (AYR52_04000) dprA 884974..885846 (+) 873 WP_068224160.1 DNA-processing protein DprA Machinery gene
  AYR52_RS04005 (AYR52_04005) topA 885957..888035 (+) 2079 WP_068224165.1 type I DNA topoisomerase -
  AYR52_RS04010 (AYR52_04010) trmFO 888051..889361 (+) 1311 WP_068224168.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AYR52_RS04015 (AYR52_04015) xerC 889428..890333 (+) 906 WP_068224171.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 31753.50 Da        Isoelectric Point: 8.6493

>NTDB_id=172810 AYR52_RS04000 WP_068224160.1 884974..885846(+) (dprA) [Loigolactobacillus backii strain TMW 1.1988]
MQKRELLLQLHLAQGIGLASENHLAKLLAKLPADFDCNHLKTTQLATLAKLTTANRSRFSADFRTEEHLARCCQQGENYL
TIFDAAYPKRLRETYQPPTVLFYQGNLALLQTTCLAIVGARQATSYTPQVLKNFLPSLVKVRCTIMSGLAQGADGYAHQL
TLASGGQTIAVIGTGLDTYYPKQNAQLQAQVAQNGLVLSEYPLGSRPERYHFPQRNRIIAGLCHALCVTEARHHSGSLIT
ANLALQENRSVLAVPGSITAPLSAGCNELILAGAKPALTPRDIWEELQYF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=172810 AYR52_RS04000 WP_068224160.1 884974..885846(+) (dprA) [Loigolactobacillus backii strain TMW 1.1988]
ATGCAAAAACGTGAATTACTCTTACAGTTACATTTGGCCCAGGGCATTGGTTTGGCCAGCGAAAACCACTTGGCAAAATT
ATTGGCCAAGTTACCTGCGGATTTTGATTGTAATCATTTGAAAACCACCCAACTGGCTACGTTGGCTAAGTTGACGACCG
CTAACCGCAGCCGCTTTAGTGCTGATTTTCGAACGGAGGAGCACTTAGCTCGTTGCTGTCAACAAGGGGAGAACTATTTG
ACAATTTTTGACGCGGCCTATCCAAAACGACTACGGGAAACTTATCAACCGCCAACTGTCCTGTTTTACCAAGGAAATCT
CGCGCTACTACAGACCACTTGTTTAGCGATTGTTGGTGCGCGGCAAGCCACTAGTTATACGCCGCAAGTACTTAAGAATT
TCTTACCTAGTTTAGTCAAGGTCCGGTGCACAATTATGAGTGGTTTGGCTCAGGGCGCTGACGGTTACGCCCACCAATTG
ACCTTGGCCAGCGGCGGGCAAACAATCGCGGTGATCGGCACTGGGTTAGATACCTATTATCCCAAACAAAATGCGCAGTT
ACAGGCTCAAGTTGCTCAAAACGGGCTAGTTCTTTCTGAATACCCCTTAGGAAGTCGGCCGGAGCGGTACCATTTTCCCC
AGCGTAATCGAATTATCGCCGGTTTATGTCACGCCTTGTGTGTCACTGAGGCCCGGCACCACAGTGGTAGTCTGATTACG
GCCAACTTGGCCTTACAGGAAAATCGTTCCGTTTTGGCCGTTCCCGGTTCGATCACGGCGCCCCTATCTGCTGGGTGTAA
TGAATTAATTTTGGCCGGCGCCAAACCAGCCTTAACGCCCCGAGATATTTGGGAAGAATTACAGTATTTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A192H3X9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

52.027

100

0.531

Multiple sequence alignment