Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | AYR52_RS01625 | Genome accession | NZ_CP014623 |
| Coordinates | 383296..384666 (+) | Length | 456 a.a. |
| NCBI ID | WP_068223000.1 | Uniprot ID | A0A192H266 |
| Organism | Loigolactobacillus backii strain TMW 1.1988 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 378296..389666
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYR52_RS01610 (AYR52_01610) | - | 380592..381929 (-) | 1338 | WP_068222994.1 | aminopeptidase C | - |
| AYR52_RS01615 (AYR52_01615) | - | 382038..382316 (-) | 279 | WP_068222997.1 | GNAT family N-acetyltransferase | - |
| AYR52_RS01620 (AYR52_01620) | - | 382464..383003 (+) | 540 | WP_178378338.1 | dUTP diphosphatase | - |
| AYR52_RS01625 (AYR52_01625) | radA | 383296..384666 (+) | 1371 | WP_068223000.1 | DNA repair protein RadA | Machinery gene |
| AYR52_RS01630 (AYR52_01630) | - | 384756..385892 (+) | 1137 | WP_068223002.1 | PIN/TRAM domain-containing protein | - |
| AYR52_RS01635 (AYR52_01635) | gltX | 386016..387506 (+) | 1491 | WP_068223005.1 | glutamate--tRNA ligase | - |
| AYR52_RS01640 (AYR52_01640) | - | 387719..389023 (-) | 1305 | WP_237051155.1 | ISL3 family transposase | - |
Sequence
Protein
Download Length: 456 a.a. Molecular weight: 49775.64 Da Isoelectric Point: 9.2151
>NTDB_id=172802 AYR52_RS01625 WP_068223000.1 383296..384666(+) (radA) [Loigolactobacillus backii strain TMW 1.1988]
MTKQKTQYVCQSCGYISPRFLGRCPNCGAWNQMVEELVAAKKPVANAQTNLAGKVSKPELMNQVNIEKEPRVKTKMVELN
RVLGGGIVPGSLVLVGGDPGIGKSTLLLQVSGQLSELGERVLYVSGEESASQIKMRAGRLGVSGQGLYLYPETDMVSIKQ
QINELKPAYVIIDSIQTMQEPELSSVVGSVSQVREVTAELMKLAKQNQITIFIVGHVTKDGSIAGPKILEHMVDTVLYFE
GDRNRTFRILRAVKNRFGSTNEIGIFEMHNGGLHEVKNPSEIFLEERLEGATGSAVVVSLEGTRPILVEIQALVTPTVFG
NAKRTTTGLDHNRAALIMAVLEKRANLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSVASSYRDKETRPTDCFIGEIGLTG
EIRSVNRIEQRIKEAAKLGFKRAFVPRNNMKDVEVPKSIQIITVTTIAEALKKAFS
MTKQKTQYVCQSCGYISPRFLGRCPNCGAWNQMVEELVAAKKPVANAQTNLAGKVSKPELMNQVNIEKEPRVKTKMVELN
RVLGGGIVPGSLVLVGGDPGIGKSTLLLQVSGQLSELGERVLYVSGEESASQIKMRAGRLGVSGQGLYLYPETDMVSIKQ
QINELKPAYVIIDSIQTMQEPELSSVVGSVSQVREVTAELMKLAKQNQITIFIVGHVTKDGSIAGPKILEHMVDTVLYFE
GDRNRTFRILRAVKNRFGSTNEIGIFEMHNGGLHEVKNPSEIFLEERLEGATGSAVVVSLEGTRPILVEIQALVTPTVFG
NAKRTTTGLDHNRAALIMAVLEKRANLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSVASSYRDKETRPTDCFIGEIGLTG
EIRSVNRIEQRIKEAAKLGFKRAFVPRNNMKDVEVPKSIQIITVTTIAEALKKAFS
Nucleotide
Download Length: 1371 bp
>NTDB_id=172802 AYR52_RS01625 WP_068223000.1 383296..384666(+) (radA) [Loigolactobacillus backii strain TMW 1.1988]
GTGACAAAACAAAAAACACAATATGTTTGCCAGAGCTGTGGTTATATTTCACCACGCTTTTTAGGCCGTTGCCCAAACTG
TGGGGCCTGGAATCAGATGGTTGAAGAGTTAGTTGCGGCTAAAAAACCGGTAGCCAATGCTCAGACTAATTTGGCGGGCA
AGGTGTCTAAGCCGGAATTAATGAATCAAGTTAACATTGAAAAAGAACCACGTGTTAAGACAAAAATGGTTGAATTAAAT
CGAGTACTGGGTGGCGGAATCGTTCCTGGTTCTTTAGTGCTGGTTGGTGGTGATCCGGGGATTGGTAAATCAACCTTGTT
ACTCCAAGTTTCTGGTCAATTAAGTGAGTTAGGCGAGCGAGTGCTTTACGTTTCCGGTGAAGAGAGTGCCTCGCAAATTA
AAATGCGTGCTGGACGACTAGGTGTCTCTGGGCAAGGACTTTATTTATACCCGGAAACAGATATGGTCAGTATCAAACAA
CAGATTAATGAGCTGAAGCCGGCCTACGTCATTATTGATTCAATTCAAACCATGCAAGAGCCGGAATTAAGCTCGGTTGT
GGGCAGTGTTTCGCAAGTTCGTGAAGTAACCGCTGAATTGATGAAATTGGCCAAGCAGAATCAAATTACGATTTTTATTG
TTGGACACGTGACTAAAGATGGGTCAATTGCGGGTCCGAAAATACTGGAACACATGGTTGACACAGTTTTGTACTTTGAA
GGCGATCGGAACCGAACTTTCCGAATTTTACGGGCGGTTAAAAATCGCTTTGGTTCAACTAACGAAATTGGTATTTTTGA
GATGCATAACGGTGGTCTACATGAAGTTAAAAACCCCTCGGAGATCTTTCTTGAGGAACGCTTGGAAGGAGCTACCGGCT
CAGCGGTGGTTGTATCGTTAGAGGGAACGCGGCCGATTCTAGTTGAAATTCAGGCGTTAGTGACACCAACAGTTTTTGGT
AATGCAAAGCGGACTACTACGGGGCTGGACCATAACCGAGCGGCCCTAATTATGGCAGTGCTAGAGAAGCGAGCAAACCT
AATGTTGCAGAATCAGGATGCTTATTTAAAGGCCGCTGGTGGCGTTAAGCTTGATGAGCCGGCAATTGACTTAGCAATTG
CGGTTAGTGTTGCTTCCTCATACCGCGACAAGGAAACGAGACCGACGGATTGTTTTATTGGTGAAATTGGTTTGACTGGG
GAGATTCGGAGCGTTAATCGAATTGAACAGCGAATTAAGGAAGCGGCTAAACTTGGTTTTAAGCGTGCTTTTGTACCACG
CAATAATATGAAGGATGTTGAAGTTCCTAAGTCAATTCAGATTATTACTGTCACGACAATTGCGGAGGCTTTAAAAAAAG
CATTTAGTTAG
GTGACAAAACAAAAAACACAATATGTTTGCCAGAGCTGTGGTTATATTTCACCACGCTTTTTAGGCCGTTGCCCAAACTG
TGGGGCCTGGAATCAGATGGTTGAAGAGTTAGTTGCGGCTAAAAAACCGGTAGCCAATGCTCAGACTAATTTGGCGGGCA
AGGTGTCTAAGCCGGAATTAATGAATCAAGTTAACATTGAAAAAGAACCACGTGTTAAGACAAAAATGGTTGAATTAAAT
CGAGTACTGGGTGGCGGAATCGTTCCTGGTTCTTTAGTGCTGGTTGGTGGTGATCCGGGGATTGGTAAATCAACCTTGTT
ACTCCAAGTTTCTGGTCAATTAAGTGAGTTAGGCGAGCGAGTGCTTTACGTTTCCGGTGAAGAGAGTGCCTCGCAAATTA
AAATGCGTGCTGGACGACTAGGTGTCTCTGGGCAAGGACTTTATTTATACCCGGAAACAGATATGGTCAGTATCAAACAA
CAGATTAATGAGCTGAAGCCGGCCTACGTCATTATTGATTCAATTCAAACCATGCAAGAGCCGGAATTAAGCTCGGTTGT
GGGCAGTGTTTCGCAAGTTCGTGAAGTAACCGCTGAATTGATGAAATTGGCCAAGCAGAATCAAATTACGATTTTTATTG
TTGGACACGTGACTAAAGATGGGTCAATTGCGGGTCCGAAAATACTGGAACACATGGTTGACACAGTTTTGTACTTTGAA
GGCGATCGGAACCGAACTTTCCGAATTTTACGGGCGGTTAAAAATCGCTTTGGTTCAACTAACGAAATTGGTATTTTTGA
GATGCATAACGGTGGTCTACATGAAGTTAAAAACCCCTCGGAGATCTTTCTTGAGGAACGCTTGGAAGGAGCTACCGGCT
CAGCGGTGGTTGTATCGTTAGAGGGAACGCGGCCGATTCTAGTTGAAATTCAGGCGTTAGTGACACCAACAGTTTTTGGT
AATGCAAAGCGGACTACTACGGGGCTGGACCATAACCGAGCGGCCCTAATTATGGCAGTGCTAGAGAAGCGAGCAAACCT
AATGTTGCAGAATCAGGATGCTTATTTAAAGGCCGCTGGTGGCGTTAAGCTTGATGAGCCGGCAATTGACTTAGCAATTG
CGGTTAGTGTTGCTTCCTCATACCGCGACAAGGAAACGAGACCGACGGATTGTTTTATTGGTGAAATTGGTTTGACTGGG
GAGATTCGGAGCGTTAATCGAATTGAACAGCGAATTAAGGAAGCGGCTAAACTTGGTTTTAAGCGTGCTTTTGTACCACG
CAATAATATGAAGGATGTTGAAGTTCCTAAGTCAATTCAGATTATTACTGTCACGACAATTGCGGAGGCTTTAAAAAAAG
CATTTAGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Streptococcus pneumoniae Rx1 |
68.86 |
100 |
0.689 |
| radA | Streptococcus pneumoniae D39 |
68.86 |
100 |
0.689 |
| radA | Streptococcus pneumoniae R6 |
68.86 |
100 |
0.689 |
| radA | Streptococcus pneumoniae TIGR4 |
68.86 |
100 |
0.689 |
| radA | Streptococcus mitis NCTC 12261 |
68.86 |
100 |
0.689 |
| radA | Streptococcus mitis SK321 |
68.64 |
100 |
0.686 |
| radA | Bacillus subtilis subsp. subtilis str. 168 |
63.537 |
100 |
0.638 |