Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BMJ42_RS06360 Genome accession   NZ_CP018136
Coordinates   1139021..1140688 (-) Length   555 a.a.
NCBI ID   WP_000923579.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SP49     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1134021..1145688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMJ42_RS06335 (BMJ42_01187) - 1135115..1135417 (-) 303 WP_000590570.1 PTS sugar transporter subunit IIB -
  BMJ42_RS06340 (BMJ42_01188) - 1135455..1135931 (-) 477 Protein_1181 PTS sugar transporter subunit IIA -
  BMJ42_RS13335 (BMJ42_01189) - 1136111..1136308 (+) 198 WP_000693364.1 hypothetical protein -
  BMJ42_RS06350 (BMJ42_01190) lepA 1136389..1138212 (-) 1824 WP_001047212.1 translation elongation factor 4 -
  BMJ42_RS06355 (BMJ42_01191) - 1138291..1139019 (-) 729 WP_000133339.1 metallophosphoesterase family protein -
  BMJ42_RS06360 (BMJ42_01192) recN 1139021..1140688 (-) 1668 WP_000923579.1 DNA repair protein RecN Machinery gene
  BMJ42_RS06365 (BMJ42_01193) - 1140695..1141126 (-) 432 WP_001034412.1 arginine repressor -
  BMJ42_RS06370 (BMJ42_01194) - 1141119..1141934 (-) 816 WP_001041079.1 TlyA family RNA methyltransferase -
  BMJ42_RS06375 (BMJ42_01195) - 1141927..1142802 (-) 876 WP_000743808.1 polyprenyl synthetase family protein -
  BMJ42_RS06380 (BMJ42_01196) - 1142799..1143011 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  BMJ42_RS06385 (BMJ42_01197) xseA 1142989..1144329 (-) 1341 WP_000417460.1 exodeoxyribonuclease VII large subunit -
  BMJ42_RS06390 (BMJ42_01198) udk 1144457..1145095 (-) 639 WP_001181378.1 uridine kinase -
  BMJ42_RS06400 (BMJ42_01199) - 1145203..1145505 (-) 303 WP_000985089.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62781.24 Da        Isoelectric Point: 4.7067

>NTDB_id=172787 BMJ42_RS06360 WP_000923579.1 1139021..1140688(-) (recN) [Streptococcus pneumoniae strain SP49]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDSEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNKMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=172787 BMJ42_RS06360 WP_000923579.1 1139021..1140688(-) (recN) [Streptococcus pneumoniae strain SP49]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAGTATGATTCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATAAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44