Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AW52_RS13620 Genome accession   NZ_CP014620
Coordinates   2802371..2802976 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1676 isolate SAN082     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2797371..2807976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW52_RS13605 (AW52_13605) helD 2797588..2799642 (-) 2055 WP_024155604.1 DNA helicase IV -
  AW52_RS13610 (AW52_13610) - 2799766..2800212 (+) 447 WP_023243628.1 YccF domain-containing protein -
  AW52_RS13615 (AW52_13615) yccS 2800231..2802384 (+) 2154 WP_000950869.1 YccS family putative transporter -
  AW52_RS13620 (AW52_13620) sxy/tfoX 2802371..2802976 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  AW52_RS13625 (AW52_13625) sulA 2803193..2803702 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  AW52_RS13630 (AW52_13630) ompA 2804059..2805111 (+) 1053 WP_001670727.1 porin OmpA -
  AW52_RS13635 (AW52_13635) matP 2805183..2805635 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  AW52_RS13640 (AW52_13640) - 2805821..2807581 (+) 1761 WP_000156448.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=172770 AW52_RS13620 WP_001202375.1 2802371..2802976(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1676 isolate SAN082]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=172770 AW52_RS13620 WP_001202375.1 2802371..2802976(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1676 isolate SAN082]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment