Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   BMJ42_RS03445 Genome accession   NZ_CP018136
Coordinates   588761..589027 (+) Length   88 a.a.
NCBI ID   WP_001814186.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SP49     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 583761..594027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMJ42_RS03425 (BMJ42_00643) - 584025..584534 (+) 510 WP_000619939.1 GNAT family N-acetyltransferase -
  BMJ42_RS03430 (BMJ42_00644) pheT 584611..587016 (+) 2406 WP_000961570.1 phenylalanine--tRNA ligase subunit beta -
  BMJ42_RS03435 (BMJ42_00645) - 587084..588085 (-) 1002 WP_000597984.1 endonuclease/exonuclease/phosphatase family protein -
  BMJ42_RS03440 - 588232..588635 (+) 404 Protein_636 helix-turn-helix domain-containing protein -
  BMJ42_RS03445 HI0659 588761..589027 (+) 267 WP_001814186.1 helix-turn-helix domain-containing protein Machinery gene
  BMJ42_RS03450 (BMJ42_00647) metE 589288..591537 (+) 2250 WP_000108216.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  BMJ42_RS03455 (BMJ42_00648) metF 591601..592467 (+) 867 WP_001277841.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9641.11 Da        Isoelectric Point: 4.2720

>NTDB_id=172763 BMJ42_RS03445 WP_001814186.1 588761..589027(+) (HI0659) [Streptococcus pneumoniae strain SP49]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=172763 BMJ42_RS03445 WP_001814186.1 588761..589027(+) (HI0659) [Streptococcus pneumoniae strain SP49]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489

Multiple sequence alignment