Detailed information NTG0172697

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BSG24_RS15600
• Genome accession: NZ_CP018121
• Coordinates: 3022509..3023501 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MRSN346355
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3017509..3028501

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSG24_RS15575 (BSG24_14730)	ygbN	3018164..3019528 (+)	1365	WP_000104455.1	GntP family transporter	-
BSG24_RS15580 (BSG24_14735)	-	3019567..3019803 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
BSG24_RS15585 (BSG24_14740)	-	3019814..3021241 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
BSG24_RS15590 (BSG24_14745)	-	3021241..3021834 (-)	594	WP_001521150.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
BSG24_RS15595 (BSG24_14750)	-	3021981..3022388 (+)	408	WP_001521151.1	MarR family transcriptional regulator	-
BSG24_RS15600 (BSG24_14755)	rpoS	3022509..3023501 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BSG24_RS15605 (BSG24_14760)	nlpD	3023564..3024658 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
BSG24_RS15610 (BSG24_14765)	pcm	3024843..3025469 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BSG24_RS15615 (BSG24_14770)	surE	3025463..3026224 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BSG24_RS15620 (BSG24_14775)	truD	3026205..3027254 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
BSG24_RS15625 (BSG24_14780)	ispF	3027251..3027730 (-)	480	WP_001521152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BSG24_RS15630 (BSG24_14785)	ispD	3027730..3028440 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=172697 BSG24_RS15600 WP_000081550.1 3022509..3023501(-) (rpoS) [Escherichia coli strain MRSN346355]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=172697 BSG24_RS15600 WP_000081550.1 3022509..3023501(-) (rpoS) [Escherichia coli strain MRSN346355]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTCTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715