Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AZE41_RS02245 Genome accession   NZ_CP014616
Coordinates   467464..468414 (+) Length   316 a.a.
NCBI ID   WP_067205131.1    Uniprot ID   A0A7G8X7L4
Organism   Sporosarcina psychrophila strain DSM 6497     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 462464..473414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZE41_RS02230 (AZE41_02230) hflX 462513..463784 (+) 1272 WP_067205122.1 GTPase HflX -
  AZE41_RS02235 (AZE41_02235) - 464298..466016 (-) 1719 WP_067205125.1 ABC transporter ATP-binding protein -
  AZE41_RS02240 (AZE41_02240) - 466239..467117 (+) 879 WP_067205128.1 DUF6612 family protein -
  AZE41_RS02245 (AZE41_02245) ceuB 467464..468414 (+) 951 WP_067205131.1 ABC transporter permease Machinery gene
  AZE41_RS02250 (AZE41_02250) - 468407..469357 (+) 951 WP_067205134.1 iron chelate uptake ABC transporter family permease subunit -
  AZE41_RS02255 (AZE41_02255) - 469354..470115 (+) 762 WP_067205137.1 ABC transporter ATP-binding protein -
  AZE41_RS02260 (AZE41_02260) - 470202..471176 (+) 975 WP_067205139.1 siderophore ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34781.15 Da        Isoelectric Point: 10.2380

>NTDB_id=172688 AZE41_RS02245 WP_067205131.1 467464..468414(+) (ceuB) [Sporosarcina psychrophila strain DSM 6497]
MKIRYLVIALISLSFLSLFVGVSHITPMGLLDFKSEATEIFLISRVPRLVAILLAGAGMSIAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFTNASTIEKMIVAFVFALAGTLLFMQILDRIKFKDAIFIPLVGLMFGNILSSIATFFAYKANVI
QNMSAWLQGDFSMIMKGRYELLYISIPVLIITYLYANRFTVAGMGEDFSKNLGLAYRRIVNIGLILVALITTTVVLTVGM
IPFLGLIIPNIVSIFKGDHLQKTLPHTALLGAIFLLVCDILGRVLIYPYEISISLMVGVIGSGIFLYLLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=172688 AZE41_RS02245 WP_067205131.1 467464..468414(+) (ceuB) [Sporosarcina psychrophila strain DSM 6497]
ATGAAGATACGTTACTTAGTCATCGCACTTATCAGTCTTTCATTCCTATCGTTATTTGTTGGAGTGAGCCATATTACGCC
AATGGGTCTGCTTGATTTTAAATCGGAAGCAACCGAAATTTTTCTAATCAGCCGCGTGCCGCGACTTGTCGCTATTCTTC
TTGCAGGAGCAGGGATGAGTATAGCAGGTCTCATTATGCAACAGCTGAGCCGAAATAAATTCGTTTCACCGACAACAGCA
GGAACTTTGGATGCGACACGGCTCGGGATTCTTGTTTCGATGCTGTTATTCACAAACGCATCCACAATTGAAAAGATGAT
TGTCGCATTTGTATTCGCGCTTGCCGGCACGCTACTGTTTATGCAAATCCTTGACCGTATCAAATTCAAGGATGCGATTT
TCATTCCGTTAGTTGGGCTTATGTTCGGTAATATTTTGTCATCTATTGCGACGTTTTTCGCTTACAAAGCGAACGTCATT
CAAAATATGTCGGCATGGTTACAAGGTGATTTTTCGATGATTATGAAAGGACGTTATGAACTTCTATACATAAGCATTCC
CGTGCTAATCATCACATATTTGTACGCAAACCGGTTTACTGTTGCGGGAATGGGTGAGGATTTCTCGAAAAACCTCGGGC
TTGCTTATAGGCGGATCGTCAATATCGGACTAATCCTTGTTGCGCTTATTACCACTACCGTCGTCTTGACGGTCGGAATG
ATTCCCTTCCTTGGATTGATCATTCCGAATATCGTTTCTATTTTTAAAGGAGATCATTTACAGAAGACATTGCCTCATAC
AGCACTGCTAGGCGCGATATTCCTGCTTGTCTGTGACATTTTAGGTAGAGTGCTTATCTATCCGTATGAGATTTCAATTA
GTTTGATGGTAGGCGTTATTGGCAGTGGAATATTCCTCTATTTATTGTTTAGGAGGAAGGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8X7L4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

100

0.525

Multiple sequence alignment