Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   A0E46_RS02120 Genome accession   NZ_CP014610
Coordinates   396931..398724 (+) Length   597 a.a.
NCBI ID   WP_061514769.1    Uniprot ID   -
Organism   Leuconostoc mesenteroides subsp. mesenteroides strain BD3749     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 391931..403724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0E46_RS02100 - 392106..393548 (+) 1443 WP_061514766.1 ABC transporter substrate-binding protein/permease -
  A0E46_RS02105 - 393545..394297 (+) 753 WP_014324324.1 amino acid ABC transporter ATP-binding protein -
  A0E46_RS02110 - 394364..395809 (+) 1446 WP_061514767.1 ABC transporter substrate-binding protein/permease -
  A0E46_RS02115 - 395851..396873 (+) 1023 WP_061514768.1 competence protein CoiA -
  A0E46_RS02120 pepF 396931..398724 (+) 1794 WP_061514769.1 oligoendopeptidase F Regulator
  A0E46_RS02125 - 398835..399224 (+) 390 WP_011679291.1 cytidine deaminase -
  A0E46_RS02130 - 399241..399681 (+) 441 WP_061514770.1 nucleoside 2-deoxyribosyltransferase -
  A0E46_RS02135 - 399681..400610 (+) 930 WP_061514771.1 phosphoglycerate dehydrogenase -
  A0E46_RS02140 - 400630..400998 (+) 369 WP_050884644.1 winged helix-turn-helix transcriptional regulator -
  A0E46_RS02145 pheS 401302..402351 (+) 1050 WP_025267790.1 phenylalanine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 67805.56 Da        Isoelectric Point: 4.6734

>NTDB_id=172642 A0E46_RS02120 WP_061514769.1 396931..398724(+) (pepF) [Leuconostoc mesenteroides subsp. mesenteroides strain BD3749]
MSEKQLLRNQVPENLTWDLSSIFPTDEAWETAFNETRKSAQALSKYAGHVGDSADVLKEALEADLAVERQFEKVYVYAHQ
IYDQDTTNQKYSAYNARVQGLYAELSANTAFFQPEVLALSNEKLDAYLATAGLKKYAHFFDVLKARKPHTLPAEQEALLA
GASDIFNASEQTFGALDNSDIVFGDVHTETGEIVPLTNGLYSLLLESKDRSLREEAFTTLYDSYIALQNTFASTLSSHVK
GHNFLAKTRHYDSARQAAVTANDIPESVFETLTKTVDANLPLLHRFVSLRKKILNVDDVHSYDLYVPLVDEINFEVTYEK
AKDIVLAALAPLGEDYIAIVQKAFDERWIDVVENKGKRTGAYSSGSYDTKPYILLNWQNNLNNVYTLAHEMGHSVHSYFT
RHNQEYHYGDYPIFLAEIASTTNEGLLTDYLLKTNDDPKFQAYVLNQYLDGFKGTVFRQTQFAEFEQWIHEQSAAGVALT
ADEMSTFYGSLNQKFYGSDLFPDEAIAYEWARIPHFYYNFYVYQYSTGEAAATTLAERILTQNGAEDYKNYLKAGNSDYA
LNVIKKAGVNMSQPDYLNEAFKVFEERLNEFEKIMLK

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=172642 A0E46_RS02120 WP_061514769.1 396931..398724(+) (pepF) [Leuconostoc mesenteroides subsp. mesenteroides strain BD3749]
ATGTCTGAAAAACAACTATTACGTAATCAAGTACCAGAAAATCTTACATGGGATCTATCCTCAATTTTTCCGACAGATGA
AGCTTGGGAAACCGCTTTTAATGAGACACGAAAGTCTGCACAAGCATTAAGCAAGTATGCTGGACACGTCGGGGATTCTG
CGGATGTTTTGAAAGAAGCCTTAGAAGCAGATTTAGCAGTAGAACGTCAATTCGAAAAAGTCTACGTATATGCTCATCAA
ATTTATGATCAAGATACAACTAATCAAAAGTATAGTGCGTATAATGCTCGTGTTCAAGGCTTATATGCTGAATTAAGTGC
GAATACAGCCTTCTTCCAGCCTGAAGTGTTAGCATTGTCAAACGAGAAACTAGATGCATACTTAGCGACAGCTGGTTTGA
AAAAATATGCACACTTCTTTGACGTTTTAAAAGCTCGTAAACCGCATACGCTACCTGCAGAACAGGAAGCCTTACTAGCA
GGAGCAAGCGACATCTTTAATGCTTCTGAACAGACTTTTGGTGCATTGGATAATTCAGATATTGTTTTTGGTGATGTCCA
TACTGAAACAGGTGAAATTGTGCCATTGACAAATGGACTCTATTCATTGTTGTTGGAGTCTAAAGATCGTTCATTGCGTG
AGGAAGCGTTCACAACGCTTTATGATAGTTATATTGCTTTGCAAAATACATTTGCCTCAACGTTATCTTCACATGTCAAG
GGACATAACTTTTTGGCTAAAACTCGTCACTATGATTCAGCTCGTCAAGCTGCTGTAACAGCCAATGATATTCCTGAGTC
AGTTTTTGAAACATTAACCAAAACAGTTGATGCCAATCTGCCATTACTACACCGTTTTGTATCATTACGTAAAAAAATTC
TTAATGTTGACGATGTACACTCTTACGATTTATATGTACCACTTGTTGATGAAATTAATTTTGAAGTAACATATGAAAAG
GCAAAAGACATTGTTTTGGCGGCTTTGGCACCGTTAGGCGAGGATTACATCGCTATTGTTCAAAAGGCTTTTGATGAACG
ATGGATTGATGTGGTTGAAAACAAGGGGAAGCGTACTGGCGCTTATTCAAGCGGTTCGTATGATACAAAACCATACATTT
TGCTTAACTGGCAGAACAATTTGAATAATGTTTATACGTTGGCTCATGAAATGGGACATTCGGTTCATTCATACTTTACA
CGCCATAATCAAGAGTATCATTATGGTGATTATCCAATATTCTTAGCTGAAATTGCTTCAACTACTAATGAGGGATTATT
AACGGATTATTTGCTAAAGACAAATGATGATCCCAAGTTTCAGGCCTACGTATTGAACCAGTATCTAGATGGATTCAAAG
GAACAGTTTTCCGCCAAACTCAATTTGCTGAGTTTGAGCAATGGATTCATGAACAAAGTGCGGCTGGAGTGGCTTTGACA
GCTGATGAGATGAGTACATTCTATGGATCGTTGAATCAAAAGTTTTATGGATCGGACTTATTTCCAGATGAAGCTATTGC
TTATGAATGGGCACGTATTCCACATTTTTATTACAATTTCTATGTTTATCAATATTCGACAGGCGAAGCTGCTGCCACAA
CTTTGGCAGAACGCATACTAACACAAAATGGTGCTGAGGATTATAAGAACTATCTGAAAGCAGGTAATTCAGATTATGCT
TTAAATGTAATCAAAAAAGCTGGCGTTAACATGAGTCAACCGGACTATTTAAATGAAGCTTTCAAAGTGTTTGAAGAGCG
ATTAAATGAGTTTGAAAAAATCATGTTAAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(204-582)

Oligopeptidase F (Peptidase_M3_N)

(115-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.445

99.33

0.521

Multiple sequence alignment