Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BSG23_RS11685 Genome accession   NZ_CP018115
Coordinates   2223935..2224411 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain MRSN346638     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2218935..2229411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSG23_RS11650 (BSG23_10980) - 2219099..2220004 (+) 906 WP_039023260.1 diguanylate cyclase regulator RdcB family protein -
  BSG23_RS11655 (BSG23_10985) - 2220001..2221071 (+) 1071 WP_000102644.1 patatin-like phospholipase family protein -
  BSG23_RS11660 (BSG23_10990) - 2221207..2221890 (+) 684 WP_000775500.1 hypothetical protein -
  BSG23_RS11665 (BSG23_10995) - 2221906..2222316 (+) 411 WP_000846713.1 hypothetical protein -
  BSG23_RS28190 (BSG23_11000) - 2222537..2223358 (+) 822 Protein_2116 DUF932 domain-containing protein -
  BSG23_RS11680 (BSG23_11005) - 2223440..2223919 (+) 480 WP_047634712.1 antirestriction protein -
  BSG23_RS11685 (BSG23_11010) radC 2223935..2224411 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  BSG23_RS11690 (BSG23_11015) yeeT 2224474..2224695 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  BSG23_RS11695 (BSG23_11020) cbeA 2224769..2225137 (+) 369 WP_001285591.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  BSG23_RS11700 (BSG23_11025) cbtA 2225226..2225599 (+) 374 Protein_2121 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  BSG23_RS11705 (BSG23_11030) yeeW 2225596..2225790 (+) 195 WP_000988600.1 DUF5983 family protein -
  BSG23_RS28195 (BSG23_11035) - 2225836..2225916 (+) 81 Protein_2123 hypothetical protein -
  BSG23_RS29455 (BSG23_11040) - 2226405..2226587 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  BSG23_RS11725 (BSG23_11045) tmaR 2226688..2227017 (-) 330 WP_000450409.1 DUF496 family protein -
  BSG23_RS11730 (BSG23_11050) yeeA 2227189..2228247 (-) 1059 WP_001200890.1 FUSC family protein -
  BSG23_RS11735 (BSG23_11055) sbmC 2228445..2228918 (-) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=172603 BSG23_RS11685 WP_001186773.1 2223935..2224411(+) (radC) [Escherichia coli strain MRSN346638]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=172603 BSG23_RS11685 WP_001186773.1 2223935..2224411(+) (radC) [Escherichia coli strain MRSN346638]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCTGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392