Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BCV59_RS06750 Genome accession   NZ_CP014583
Coordinates   1019443..1020072 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CFSAN004176     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1006724..1031246 1019443..1020072 within 0


Gene organization within MGE regions


Location: 1006724..1031246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV59_RS30965 - 1007586..1008424 (-) 839 Protein_1073 IS3-like element IS600 family transposase -
  BCV59_RS06690 (BCV59_05595) yccA 1009792..1010451 (+) 660 WP_000375138.1 FtsH protease modulator YccA -
  BCV59_RS06695 (BCV59_05600) tusE 1010542..1010871 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  BCV59_RS06700 (BCV59_05605) yccX 1010868..1011146 (-) 279 WP_000048252.1 acylphosphatase -
  BCV59_RS06705 (BCV59_05610) rlmI 1011241..1012431 (+) 1191 WP_069357166.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  BCV59_RS06710 (BCV59_05615) hspQ 1012489..1012806 (+) 318 WP_001295356.1 heat shock protein HspQ -
  BCV59_RS06715 (BCV59_05620) yccU 1012851..1013264 (-) 414 WP_069357167.1 CoA-binding protein -
  BCV59_RS06725 (BCV59_05630) yccT 1013437..1014099 (+) 663 WP_000847791.1 DUF2057 family protein -
  BCV59_RS06730 (BCV59_05635) mgsA 1014195..1014653 (+) 459 WP_000424181.1 methylglyoxal synthase -
  BCV59_RS06735 (BCV59_05640) helD 1014685..1016739 (-) 2055 WP_000420537.1 DNA helicase IV -
  BCV59_RS06740 (BCV59_05645) yccF 1016862..1017308 (+) 447 WP_001261235.1 YccF domain-containing protein -
  BCV59_RS06745 (BCV59_05650) yccS 1017318..1019480 (+) 2163 WP_123003293.1 YccS family putative transporter -
  BCV59_RS06750 (BCV59_05655) sxy/tfoX 1019443..1020072 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BCV59_RS06755 (BCV59_05660) sulA 1020291..1020800 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  BCV59_RS06765 (BCV59_05670) ompA 1021157..1022197 (+) 1041 WP_000750416.1 porin OmpA -
  BCV59_RS06770 (BCV59_05675) matP 1022273..1022725 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  BCV59_RS06775 (BCV59_05680) ycbZ 1022911..1024671 (+) 1761 WP_000156532.1 Lon protease family protein -
  BCV59_RS06780 (BCV59_05685) fabA 1024740..1025258 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  BCV59_RS06785 (BCV59_05690) rmf 1025328..1025495 (-) 168 WP_000828648.1 ribosome modulation factor -
  BCV59_RS06790 (BCV59_05695) pqiC 1025751..1026314 (-) 564 WP_000759120.1 membrane integrity-associated transporter subunit PqiC -
  BCV59_RS06795 (BCV59_05700) pqiB 1026311..1027951 (-) 1641 WP_000445561.1 intermembrane transport protein PqiB -
  BCV59_RS06800 (BCV59_05705) pqiA 1027956..1029209 (-) 1254 WP_000333176.1 membrane integrity-associated transporter subunit PqiA -
  BCV59_RS06805 (BCV59_05710) uup 1029339..1031246 (-) 1908 WP_069357168.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=172571 BCV59_RS06750 WP_000839153.1 1019443..1020072(-) (sxy/tfoX) [Escherichia coli strain CFSAN004176]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=172571 BCV59_RS06750 WP_000839153.1 1019443..1020072(-) (sxy/tfoX) [Escherichia coli strain CFSAN004176]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment