Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AYM40_RS01720 Genome accession   NZ_CP014578
Coordinates   383693..385210 (-) Length   505 a.a.
NCBI ID   WP_063494696.1    Uniprot ID   -
Organism   Paraburkholderia phytofirmans OLGA172     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 378693..390210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYM40_RS01695 (AYM40_01695) - 379546..380181 (-) 636 WP_063494694.1 LON peptidase substrate-binding domain-containing protein -
  AYM40_RS01700 (AYM40_01700) rapZ 380221..381114 (-) 894 WP_063494695.1 RNase adapter RapZ -
  AYM40_RS01705 (AYM40_01705) hprK 381223..382191 (-) 969 WP_012431656.1 HPr(Ser) kinase/phosphatase -
  AYM40_RS01710 (AYM40_01710) - 382332..382847 (-) 516 WP_012431657.1 PTS sugar transporter subunit IIA -
  AYM40_RS01715 (AYM40_01715) hpf 383165..383521 (-) 357 WP_028199089.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  AYM40_RS01720 (AYM40_01720) rpoN/rpoN1 383693..385210 (-) 1518 WP_063494696.1 RNA polymerase factor sigma-54 Machinery gene
  AYM40_RS01725 (AYM40_01725) lptB 385396..386181 (-) 786 WP_063494697.1 LPS export ABC transporter ATP-binding protein -
  AYM40_RS01730 (AYM40_01730) lptA 386178..386849 (-) 672 WP_063494698.1 lipopolysaccharide transport periplasmic protein LptA -
  AYM40_RS01735 (AYM40_01735) lptC 386870..387478 (-) 609 WP_063494699.1 LPS export ABC transporter periplasmic protein LptC -
  AYM40_RS01740 (AYM40_01740) - 387475..388035 (-) 561 WP_063494700.1 KdsC family phosphatase -
  AYM40_RS01745 (AYM40_01745) kdsD 388035..389018 (-) 984 WP_063494701.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55554.71 Da        Isoelectric Point: 5.1592

>NTDB_id=172557 AYM40_RS01720 WP_063494696.1 383693..385210(-) (rpoN/rpoN1) [Paraburkholderia phytofirmans OLGA172]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAISQNPLLENEDDWIASPLRVAADGSLIAQSPNSSAPPDQM
GGNTSSSSTSSSERAENGEPQGVDEYNGLASDGNGDASQWDLGDYGRSGNASDDDDLPPLQIHESSTSLRDHLMAQLRVT
QASQRDRALITFLIESLDDDGYLAATLEEVLADLPEELEVDLDEMNAALALLHSFDPAGVGARSASECLKLQLLRLERSP
TRTLALDIVAHHLELLAARDFTRLRKHLKANDDDLRDAHILIRSLEPFPGAAYGKAEADYVVPDIMVRKTAQGWQAELNP
EVVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKSFFVHGEIAMRPLVLREIA
DTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAENPKSPLSDSRIAELLAEQGF
VVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=172557 AYM40_RS01720 WP_063494696.1 383693..385210(-) (rpoN/rpoN1) [Paraburkholderia phytofirmans OLGA172]
ATGAAAGCCAGCCTCCAACTCCGCCTATCGCAGCATCTTGCGCTGACCCCGCAACTGCAGCAGTCCATCCGGCTGCTTCA
GCTGTCCACGCTCGAACTGCAGCAGGAAGTCGCCATGGCGATCTCGCAGAATCCGCTCCTCGAGAACGAGGACGACTGGA
TCGCGAGTCCCCTGCGCGTGGCGGCCGACGGTTCGCTGATCGCCCAGTCGCCCAACTCCTCCGCACCGCCCGACCAGATG
GGCGGCAATACGTCGTCTTCGTCCACCAGCAGCAGCGAGCGCGCCGAGAACGGCGAGCCGCAGGGTGTCGACGAATACAA
CGGCCTCGCGAGCGACGGCAACGGCGACGCGTCGCAATGGGATCTCGGCGATTACGGCCGCTCCGGCAATGCCTCGGACG
ACGACGACCTGCCACCGCTGCAAATCCACGAATCGAGCACCTCGCTGCGCGATCACCTGATGGCGCAGCTTCGCGTCACC
CAGGCGAGCCAGCGCGACCGCGCGCTGATCACCTTCCTGATCGAATCGCTCGACGACGACGGTTACCTCGCCGCCACGCT
CGAAGAAGTGCTGGCCGACCTGCCCGAAGAGCTCGAAGTCGATCTCGACGAAATGAACGCCGCGCTCGCGCTGCTGCATA
GCTTCGACCCGGCGGGGGTCGGCGCGCGCTCCGCATCGGAATGTCTCAAGCTGCAATTGCTGCGGCTCGAACGGTCGCCT
ACACGCACGCTTGCGCTCGACATCGTCGCGCATCATCTGGAACTGCTCGCGGCACGCGACTTCACGCGCCTGCGCAAGCA
TCTGAAGGCGAACGACGACGATTTGCGGGATGCGCATATTCTGATCCGCTCGCTCGAGCCGTTTCCCGGCGCCGCTTATG
GCAAGGCGGAAGCGGACTATGTCGTGCCGGACATCATGGTGCGCAAAACCGCACAGGGCTGGCAGGCGGAGCTCAACCCG
GAAGTGGTGCCAAAGCTGCGCATCAACCATCTGTACGCCAATATTCTGCGCAATAACCGGGGCGATCCGGGCAGCGGATC
GTTGCGCCAGCAACTGCAGGAAGCACGCTGGCTGATCAAAAATATCCAGCAGCGCTTCGAGACCATCCTCCGGGTCGCGC
AAGCTATTGTCGAGCGTCAAAAGAGCTTTTTTGTGCATGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGAGAAATTGCT
GATACGCTGGGCCTACACGAGTCAACTGTCTCCCGTGTGACAACCGGTAAATACATGCTGACCCCATTCGGGACGCTTGA
ATTTAAGTACTTCTTCGGATCACACGTTTCGACTGACACGGGCGGCGCGGCCTCTTCCACGGCGATTCGCGCGCTCATCA
AGCAACTGATAGGAGCGGAAAACCCGAAATCTCCTCTTTCAGACAGCCGCATAGCCGAACTGCTGGCGGAACAGGGCTTC
GTGGTCGCACGGCGTACCGTTGCGAAGTATCGCGAAGCGCTCAAGATTCCGGCAGTCAACCTGCGCAAGTCTCTGTAG

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(348-503)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(141-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

66.797

100

0.677

Multiple sequence alignment