Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CFVI01165_RS05845 Genome accession   NZ_CP014568
Coordinates   1170764..1171138 (-) Length   124 a.a.
NCBI ID   WP_002849740.1    Uniprot ID   -
Organism   Campylobacter fetus subsp. venerealis strain 01/165     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1165764..1176138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFVI01165_RS05820 tatB 1166427..1166882 (+) 456 WP_002849729.1 Sec-independent protein translocase protein TatB -
  CFVI01165_RS05825 tatC 1166882..1167637 (+) 756 WP_002849731.1 twin-arginine translocase subunit TatC -
  CFVI01165_RS05830 queA 1167634..1168653 (+) 1020 WP_002849734.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CFVI01165_RS05835 - 1168663..1169907 (+) 1245 WP_011732089.1 hypothetical protein -
  CFVI01165_RS05840 - 1169893..1170756 (-) 864 WP_002849738.1 SAM-dependent methyltransferase -
  CFVI01165_RS05845 dprB 1170764..1171138 (-) 375 WP_002849740.1 Holliday junction resolvase RuvX Machinery gene
  CFVI01165_RS05850 dprA 1171135..1171902 (-) 768 WP_002849743.1 DNA-processing protein DprA Machinery gene
  CFVI01165_RS05855 - 1171886..1173049 (-) 1164 WP_011732090.1 divergent polysaccharide deacetylase family protein -
  CFVI01165_RS05860 ilvC 1173050..1174072 (-) 1023 WP_002849745.1 ketol-acid reductoisomerase -
  CFVI01165_RS05865 - 1174219..1175031 (+) 813 WP_002849747.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13694.09 Da        Isoelectric Point: 8.4803

>NTDB_id=172536 CFVI01165_RS05845 WP_002849740.1 1170764..1171138(-) (dprB) [Campylobacter fetus subsp. venerealis strain 01/165]
MIVAIDVGLKRIGVAVAVLPTVVLPSEPILRKNRNQAAKDTLKMLKEKNATKLVVGLPKGGSCEDEMERRIKHFISLVGF
DSEIIYVDEAYSSCEASELSKDSKDGRFDSIAAMVILKRYLNIL

Nucleotide


Download         Length: 375 bp        

>NTDB_id=172536 CFVI01165_RS05845 WP_002849740.1 1170764..1171138(-) (dprB) [Campylobacter fetus subsp. venerealis strain 01/165]
TTGATAGTAGCTATCGATGTCGGACTAAAAAGAATAGGAGTTGCGGTTGCGGTTTTACCGACTGTTGTACTTCCTAGCGA
ACCTATTTTACGTAAAAATCGCAATCAGGCGGCGAAAGATACTTTAAAAATGTTAAAAGAAAAAAATGCGACAAAACTAG
TAGTCGGCTTGCCAAAAGGCGGCAGCTGCGAGGATGAAATGGAAAGACGAATTAAGCATTTTATCTCTTTAGTCGGTTTT
GATTCAGAGATAATTTATGTTGATGAAGCTTATAGCAGCTGCGAAGCTAGCGAACTGTCAAAAGATTCTAAAGACGGTAG
ATTTGATAGCATTGCCGCTATGGTGATTTTAAAAAGATATCTAAATATTTTGTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

50.388

100

0.524

Multiple sequence alignment