Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   A2U21_RS08290 Genome accession   NZ_CP018034
Coordinates   1604877..1606427 (-) Length   516 a.a.
NCBI ID   WP_021110406.1    Uniprot ID   -
Organism   Glaesserella parasuis str. Nagasaki     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1599877..1611427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2U21_RS08270 (A2U21_07990) - 1600553..1602274 (+) 1722 WP_021110403.1 acetolactate synthase 3 large subunit -
  A2U21_RS08275 (A2U21_07995) ilvN 1602267..1602758 (+) 492 WP_016528224.1 acetolactate synthase small subunit -
  A2U21_RS08280 (A2U21_08000) - 1602865..1603686 (-) 822 WP_021110404.1 PHP domain-containing protein -
  A2U21_RS08285 (A2U21_08005) - 1603835..1604794 (-) 960 WP_021110405.1 SAM hydrolase/SAM-dependent halogenase family protein -
  A2U21_RS08290 (A2U21_08010) sbcB 1604877..1606427 (-) 1551 WP_021110406.1 exodeoxyribonuclease I Machinery gene
  A2U21_RS08295 (A2U21_08015) - 1606636..1606920 (-) 285 WP_016528228.1 type II toxin-antitoxin system RelE family toxin -
  A2U21_RS08300 (A2U21_08020) - 1606917..1607171 (-) 255 WP_010785924.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  A2U21_RS08305 (A2U21_08025) - 1607289..1608044 (-) 756 WP_012621503.1 ABC transporter permease -
  A2U21_RS08310 (A2U21_08030) - 1608066..1608962 (-) 897 WP_021110407.1 ABC transporter ATP-binding protein -
  A2U21_RS08315 (A2U21_08035) dnaX 1608968..1610986 (-) 2019 WP_021110408.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 59018.24 Da        Isoelectric Point: 5.6837

>NTDB_id=172389 A2U21_RS08290 WP_021110406.1 1604877..1606427(-) (sbcB) [Glaesserella parasuis str. Nagasaki]
MVQTTFFIYDYESFGVDPATDRPAQFAGIRTDSDFNIIGEPVMFYCQQTEDYLPSPEAVMVTGITPQLCNQQGLPEPEFA
ARIHVEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFK
LENLTKANGIAHDNAHDAMADVYATIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTAW
VVPLAWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKAELEAQGLYTVPLKLVHINKCPILAPAKTLLPENATRL
GIDRLACLENLKRLKSQKNLVREKVLDIFSEERNYPTSNNIETTLYDGFFEPADKNNMAILRSLKPEELAHHGLKFSDPR
IEPLLFHYRARHYSETLTRAEQVRWQKYCYQQLETKAEAFEQAVDLLSAQYHDNPEKIKLLTDLTAYAAQLMQPKATKSV
NSPASELLVSELNQLADQRLSKADKLKAIGALLNKK

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=172389 A2U21_RS08290 WP_021110406.1 1604877..1606427(-) (sbcB) [Glaesserella parasuis str. Nagasaki]
ATGGTTCAAACCACCTTTTTTATTTACGATTACGAAAGTTTTGGTGTCGATCCTGCTACAGATCGTCCTGCACAATTTGC
AGGGATCCGCACCGATAGCGATTTCAACATTATCGGTGAACCCGTGATGTTCTACTGCCAACAAACAGAAGATTATTTGC
CTTCACCAGAAGCTGTGATGGTAACAGGGATTACACCACAGCTTTGTAATCAACAAGGGCTACCTGAACCTGAATTTGCC
GCTCGTATTCACGTCGAATTTAGCCAACCTAACACCTGCGTAATGGGATATAACAACATTCGCTATGATGATGAAATGAC
CCGTTATACCTTTTTCCGCAATTTTTTCGATCCTTATGAATATAGCTGGAAAAACGGCAATTCTCGTTGGGATCTTCTTG
ATGTTGTGCGTGCCTGTTATGCTTTACGTCCAGAAGGGATAGAATGGGCGTATGATGATGAAGGTATGCCGAGCTTTAAA
TTAGAAAATTTGACCAAAGCAAATGGTATTGCTCACGACAACGCTCACGATGCAATGGCTGATGTGTATGCTACTATTGC
AATGGCAAAGTTAATCAAACAAAAACAACCTAAATTATTCGACTTTTTCCTGCAAAATCGAGGTAAAAAAGCCCTAGAAG
AGATGATTGATGTCGGTGAAATGACACCGCTTGTTCACGTTTCTGGAATGTTAGGCAACTATCGAGGTAACACCGCTTGG
GTTGTGCCATTGGCTTGGCACCCGACTAATCGAAACGCAGTGATTGTATGTGATCTATCGGGGAATATAAACGACCTATT
GAATGAGCCAAGCGAAATATTGCGTGAACGCCTTTATACCAAAAAAGCAGAATTAGAAGCTCAAGGGCTTTATACTGTTC
CACTAAAACTTGTGCATATTAATAAATGCCCGATTTTAGCTCCAGCCAAAACGTTACTGCCTGAAAATGCAACACGTTTA
GGCATTGATCGTCTAGCCTGTTTAGAAAATTTAAAACGGCTAAAATCACAAAAAAACCTTGTGCGAGAAAAGGTTCTCGA
TATTTTTTCTGAAGAAAGAAACTATCCAACGTCAAATAATATAGAAACCACGTTATACGATGGCTTTTTTGAACCTGCAG
ATAAAAACAATATGGCAATCTTACGAAGCCTAAAACCTGAAGAGCTTGCACATCACGGTTTGAAATTTAGCGATCCAAGA
ATTGAACCTCTACTTTTCCATTATCGAGCAAGACATTACTCAGAAACCTTAACACGCGCAGAACAAGTACGCTGGCAAAA
GTATTGCTATCAACAACTTGAAACAAAAGCAGAGGCCTTTGAACAAGCGGTTGATCTGTTATCGGCTCAATATCACGATA
ATCCTGAAAAGATAAAATTATTGACGGATCTCACCGCTTACGCAGCACAATTAATGCAGCCTAAAGCCACCAAATCCGTC
AATTCACCAGCTTCAGAGCTATTAGTATCGGAATTAAATCAACTTGCTGATCAAAGGCTGAGTAAAGCGGATAAATTAAA
AGCGATTGGGGCTTTGCTTAATAAAAAATAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-469)

Exonuclease (RNase_T)

(8-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

56.077

90.891

0.51

Multiple sequence alignment