Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   A2U20_RS07315 Genome accession   NZ_CP018032
Coordinates   1527129..1528505 (-) Length   458 a.a.
NCBI ID   WP_021117773.1    Uniprot ID   -
Organism   Glaesserella parasuis D74     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1522129..1533505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2U20_RS07290 (A2U20_07180) - 1522383..1523180 (+) 798 WP_235044452.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  A2U20_RS07295 (A2U20_07185) - 1523365..1524039 (+) 675 WP_021117776.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  A2U20_RS07300 (A2U20_07190) - 1524083..1525537 (-) 1455 WP_021117775.1 aminoacyl-histidine dipeptidase -
  A2U20_RS07305 (A2U20_07195) gpt 1525717..1526196 (+) 480 WP_005714020.1 xanthine phosphoribosyltransferase -
  A2U20_RS07310 (A2U20_07200) gmk 1526450..1527076 (+) 627 WP_021117774.1 guanylate kinase -
  A2U20_RS07315 (A2U20_07205) radA/sms 1527129..1528505 (-) 1377 WP_021117773.1 DNA repair protein RadA Machinery gene
  A2U20_RS07320 (A2U20_07210) pilA 1528693..1529148 (+) 456 WP_021117772.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  A2U20_RS07325 (A2U20_07215) pilB 1529389..1530774 (+) 1386 WP_021117771.1 GspE/PulE family protein Machinery gene
  A2U20_RS07330 (A2U20_07220) pilC 1530767..1531963 (+) 1197 WP_021117770.1 type II secretion system F family protein Machinery gene
  A2U20_RS07335 (A2U20_07225) - 1531960..1532628 (+) 669 WP_021117769.1 prepilin peptidase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49559.23 Da        Isoelectric Point: 7.6964

>NTDB_id=172332 A2U20_RS07315 WP_021117773.1 1527129..1528505(-) (radA/sms) [Glaesserella parasuis D74]
MAKAPKTAYVCNDCGAEYARWMGQCKACLAWNTISEVRLISAKESKSDRLSGYAGETTGKIQRLSEIDLQEVPRFSSGFY
ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLSQSVPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEHI
CNLADQEKPKLMVIDSIQVMHLADIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASLL
LEGEADSRYRTLRSQKNRFGAVNELGVFAMTEQGLKEVKNPSAIFLSRSEEQTSGSSVMVLWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEQNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSVDLALLLALISSFRNRPLPQDLVVFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIIPHGNAPKKAIKGMEVFTVKKLSDALDIVNDL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=172332 A2U20_RS07315 WP_021117773.1 1527129..1528505(-) (radA/sms) [Glaesserella parasuis D74]
ATGGCAAAAGCACCCAAAACTGCGTATGTATGTAATGATTGTGGCGCGGAATATGCTCGTTGGATGGGACAGTGTAAGGC
GTGTTTAGCGTGGAACACCATTAGCGAAGTCCGTCTGATTTCGGCAAAAGAGAGTAAAAGTGATCGCTTGAGTGGCTATG
CAGGGGAAACGACAGGCAAAATTCAGCGGCTGTCTGAAATTGATTTGCAGGAAGTGCCTCGTTTTAGCAGTGGTTTTTAT
GAGCTAGATCGTGTGCTGGGGGGCGGTATTGTACCTGGTAGTGCGATTTTGATCGGCGGACACCCCGGCGCAGGGAAAAG
TACCTTGCTCTTGCAGGTAATGTGCGGTTTATCGCAAAGTGTGCCGACCCTTTATGTGACGGGGGAAGAGTCGCTACAAC
AGGTGGCAATGCGTGCTAACCGCTTGGGCTTACCGACGGATAATCTAAAAATGCTATCTGAAACCTCAGTCGAACATATT
TGTAACCTTGCCGATCAGGAAAAACCCAAACTGATGGTGATTGACTCTATTCAAGTAATGCACCTTGCGGATATTCAATC
TTCCCCTGGCAGTGTAGCTCAAGTGCGTGAATGTGCGGCATTTTTGACACGTTATGCCAAAACACGTCAAGTGGCGATTA
TTATGGTCGGCCACGTTACCAAAGATGGAACTTTAGCAGGCCCTAAAGTGCTAGAACACGCCATTGACGCTTCGCTGTTA
TTGGAAGGGGAGGCGGACTCGCGTTATCGCACCTTACGCAGTCAGAAAAACCGTTTTGGTGCAGTGAATGAACTCGGCGT
ATTTGCAATGACAGAACAGGGCTTAAAAGAAGTGAAGAACCCTTCGGCAATCTTCTTAAGCCGTAGCGAAGAACAGACTT
CAGGCAGTTCGGTGATGGTATTATGGGAAGGCACTCGTCCATTATTGGTAGAAATTCAGGCATTGGTCGATCACTCAATG
CTTGCCAACCCTCGCCGTGTTGCGGTGGGGCTAGAACAGAACCGCTTATCGCTGTTGCTTGCGGTATTACATCGACACGG
TGGCTTGCAAATGTCCGACCAAGATGTGTTTGTGAATGTGGTCGGCGGTGTAAAAGTCACTGAAACCAGTGTCGACTTAG
CTCTATTATTGGCACTCATTTCGAGCTTCCGCAATCGTCCGTTACCGCAAGATTTGGTGGTCTTTGGCGAAGTTGGTTTA
GCTGGGGAAATTCGCCCTGTGCCAAGCGGACAAGAGCGAATTAGTGAGGCAGCAAAACACGGCTTTAAGCGTGCGATCAT
TCCTCACGGCAACGCCCCGAAAAAAGCGATTAAGGGAATGGAAGTATTTACCGTGAAGAAATTAAGTGATGCCTTGGATA
TTGTGAATGATCTATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)

AAA domain (AAA_25)

(84-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.692

99.345

0.474
  radA Streptococcus mitis NCTC 12261

44.812

98.908

0.443
  radA Streptococcus mitis SK321

44.592

98.908

0.441
  radA Streptococcus pneumoniae Rx1

45.921

93.668

0.43
  radA Streptococcus pneumoniae D39

45.921

93.668

0.43
  radA Streptococcus pneumoniae R6

45.921

93.668

0.43
  radA Streptococcus pneumoniae TIGR4

45.921

93.668

0.43

Multiple sequence alignment