Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AYR69_RS16890 Genome accession   NZ_CP014540
Coordinates   3542207..3542848 (-) Length   213 a.a.
NCBI ID   WP_000201224.1    Uniprot ID   A0A009T8N7
Organism   Acinetobacter baumannii strain XH857     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3537207..3547848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR69_RS16870 (AYR69_16870) aroK 3538123..3538692 (-) 570 WP_000643712.1 shikimate kinase AroK -
  AYR69_RS16875 (AYR69_16875) pilQ 3538704..3540869 (-) 2166 WP_002062175.1 type IV pilus secretin PilQ family protein Machinery gene
  AYR69_RS16880 (AYR69_16880) pilP 3540932..3541459 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  AYR69_RS16885 (AYR69_16885) pilO 3541470..3542210 (-) 741 WP_000081156.1 type 4a pilus biogenesis protein PilO Machinery gene
  AYR69_RS16890 (AYR69_16890) pilN 3542207..3542848 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  AYR69_RS16895 (AYR69_16895) pilM 3542848..3543906 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AYR69_RS16900 (AYR69_16900) ponA 3544069..3546624 (+) 2556 WP_038344376.1 penicillin-binding protein PBP1a -
  AYR69_RS16905 (AYR69_16905) - 3546642..3547466 (-) 825 WP_002125608.1 putative RNA methyltransferase -
  AYR69_RS16910 (AYR69_16910) - 3547469..3547801 (-) 333 WP_000169599.1 DUF7709 family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24029.39 Da        Isoelectric Point: 5.3968

>NTDB_id=172322 AYR69_RS16890 WP_000201224.1 3542207..3542848(-) (pilN) [Acinetobacter baumannii strain XH857]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=172322 AYR69_RS16890 WP_000201224.1 3542207..3542848(-) (pilN) [Acinetobacter baumannii strain XH857]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T8N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704

Multiple sequence alignment