Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   A2U20_RS03680 Genome accession   NZ_CP018032
Coordinates   711415..712965 (+) Length   516 a.a.
NCBI ID   WP_021117959.1    Uniprot ID   -
Organism   Glaesserella parasuis D74     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 706415..717965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2U20_RS03655 (A2U20_03615) dnaX 706605..708623 (+) 2019 WP_021117958.1 DNA polymerase III subunit gamma/tau -
  A2U20_RS03660 (A2U20_03620) - 708629..709525 (+) 897 WP_005712691.1 ABC transporter ATP-binding protein -
  A2U20_RS03665 (A2U20_03625) - 709547..710302 (+) 756 WP_021112098.1 ABC transporter permease -
  A2U20_RS03670 (A2U20_03630) - 710395..710832 (-) 438 WP_005712689.1 type II toxin-antitoxin system HicB family antitoxin -
  A2U20_RS03675 (A2U20_03635) - 710862..711047 (-) 186 WP_021112099.1 type II toxin-antitoxin system HicA family toxin -
  A2U20_RS03680 (A2U20_03640) sbcB 711415..712965 (+) 1551 WP_021117959.1 exodeoxyribonuclease I Machinery gene
  A2U20_RS03685 (A2U20_03645) - 713048..714007 (+) 960 WP_021117960.1 SAM hydrolase/SAM-dependent halogenase family protein -
  A2U20_RS03690 (A2U20_03650) - 714042..714638 (+) 597 WP_020996918.1 uracil DNA glycosylase superfamily protein -
  A2U20_RS03695 (A2U20_03655) - 714639..715460 (+) 822 WP_021117961.1 PHP domain-containing protein -
  A2U20_RS03700 (A2U20_03660) ilvN 715567..716058 (-) 492 WP_005712683.1 acetolactate synthase small subunit -
  A2U20_RS03705 (A2U20_03665) - 716051..717772 (-) 1722 WP_021117962.1 acetolactate synthase 3 large subunit -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 58879.04 Da        Isoelectric Point: 5.5315

>NTDB_id=172322 A2U20_RS03680 WP_021117959.1 711415..712965(+) (sbcB) [Glaesserella parasuis D74]
MVQTTFFIYDYESFGVDPATDRPAQFAGIRTDSDFNIIGEPVMFYCRQTEDYLPSPEAVMVTGITPQLCNQQGLPEPEFA
ARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFK
LENLTKANGIAHDNAHDAMADVYATIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTAW
VVPLAWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKVELEAQGLYAVPLKLVHINKCPILAPAKTLLSENATRL
GIDRQACLENLKLLKSQKSLVREKVIDIFSEERNYPASNNIETTLYDGFFEPADKNNMAILRNLKPEELAHHGLKFSDPR
IEPLLFHYRARHYSETLTRTEQVRWQKYCYQQLETKAEAFEQAVDLLSAQYHDNPEKIKLLTDLTAYAAQLMQPKATKSV
NSPASELLVSELNQLADQGLSKADKLKAIGALLNKK

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=172322 A2U20_RS03680 WP_021117959.1 711415..712965(+) (sbcB) [Glaesserella parasuis D74]
ATGGTTCAAACCACCTTTTTTATTTACGATTACGAAAGTTTTGGTGTCGATCCTGCTACAGATCGTCCTGCACAATTCGC
AGGGATCCGCACCGATAGCGATTTCAATATTATCGGTGAACCTGTGATGTTCTACTGCCGACAAACAGAAGATTATTTGC
CGTCACCAGAAGCCGTGATGGTAACAGGGATTACGCCACAGCTTTGTAATCAACAAGGGTTACCTGAACCTGAATTTGCC
GCTCGTATTCACGCCGAATTTAGCCAACCTAACACCTGCGTGATGGGATATAACAACATTCGCTATGATGATGAAATGAC
CCGTTATACCTTTTTCCGCAATTTTTTCGATCCTTATGAATATAGCTGGAAAAACGGCAATTCTCGTTGGGATCTTCTTG
ATGTTGTGCGTGCCTGTTATGCTTTACGTCCAGAAGGGATAGAATGGGCGTATGATGATGAAGGTATGCCGAGCTTTAAA
TTAGAAAATTTGACCAAAGCAAATGGTATTGCTCACGACAACGCTCACGATGCAATGGCTGATGTGTATGCTACTATTGC
AATGGCAAAGTTAATCAAACAAAAACAACCTAAATTATTCGACTTTTTCCTGCAAAATCGAGGTAAAAAAGCCCTAGAAG
AGATGATTGATGTCGGTGAAATGACACCGCTTGTTCACGTTTCTGGAATGTTAGGCAACTATCGAGGTAACACCGCTTGG
GTTGTGCCATTGGCTTGGCATCCGACTAATCGAAACGCAGTGATTGTATGTGATCTATCGGGGAATATAAACGACCTATT
GAATGAGCCAAGCGAAATATTGCGTGAACGTCTTTATACCAAAAAAGTAGAATTAGAAGCTCAAGGGCTTTATGCTGTTC
CACTAAAACTCGTGCATATTAATAAATGCCCAATTTTAGCTCCAGCCAAAACGTTACTGTCTGAAAATGCAACACGTTTA
GGCATCGATCGTCAAGCCTGTTTAGAAAATTTAAAACTGCTAAAATCCCAAAAAAGCCTTGTGCGAGAAAAGGTTATTGA
TATTTTTTCTGAGGAAAGGAATTATCCAGCGTCAAATAATATAGAAACCACGTTATACGATGGCTTTTTTGAACCTGCAG
ATAAAAACAATATGGCGATTTTGCGAAATCTAAAACCTGAAGAGCTTGCACATCACGGCTTGAAATTTAGCGATCCAAGA
ATTGAACCTCTACTTTTCCATTATCGAGCAAGACATTACTCAGAAACCTTAACACGCACAGAACAAGTACGCTGGCAAAA
GTATTGCTATCAACAACTTGAAACAAAAGCAGAGGCCTTTGAACAAGCGGTTGATCTGTTATCGGCTCAATATCACGATA
ATCCTGAAAAGATAAAATTATTGACAGATCTCACCGCTTACGCAGCACAATTAATGCAGCCTAAAGCCACCAAGTCCGTC
AATTCACCAGCTTCAGAGCTATTAGTATCGGAATTAAATCAACTTGCTGATCAAGGGCTGAGTAAAGCGGATAAATTAAA
AGCGATTGGGGCTTTGCTTAATAAAAAATAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(8-186)

Exonuclease C-terminal (ExoI_SH3)

(207-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

56.29

90.891

0.512

Multiple sequence alignment